Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| POMNJAJB_1 | 1191 | 1895 | WalR | 3.15e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| POMNJAJB_11 | 40593 | 40787 | CspR | 4.61e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| POMNJAJB_11 | 40593 | 40790 | CspA | 7.07e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| POMNJAJB_1 | 0.0 | 1.0 | 0.0 |
| POMNJAJB_2 | 1.0 | 0.0 | 1.0 |
| POMNJAJB_3 | 0.0 | 1.0 | 0.0 |
| POMNJAJB_4 | 0.0 | 1.0 | 0.0 |
| POMNJAJB_5 | 0.0 | 1.0 | 0.0 |
| POMNJAJB_6 | 0.0 | 1.0 | 0.0 |
| POMNJAJB_7 | 0.0 | 1.0 | 0.0 |
| POMNJAJB_8 | 0.0 | 1.0 | 0.0 |
| POMNJAJB_9 | 0.0 | 1.0 | 0.0 |
| POMNJAJB_10 | 0.0 | 1.0 | 0.0 |
| POMNJAJB_11 | 0.0 | 1.0 | 0.0 |
| POMNJAJB_12 | 0.0 | 1.0 | 0.0 |
| POMNJAJB_13 | 0.0 | 1.0 | 0.0 |
| POMNJAJB_14 | 1.0 | 0.0 | 1.0 |
| POMNJAJB_15 | 1.0 | 0.0 | 1.0 |
| POMNJAJB_16 | 1.0 | 0.0 | 1.0 |
| POMNJAJB_17 | 0.0 | 1.0 | 0.0 |
| POMNJAJB_18 | 0.0 | 1.0 | 0.0 |
| POMNJAJB_19 | 0.0 | 1.0 | 0.0 |
| POMNJAJB_20 | 0.0 | 1.0 | 0.0 |
| POMNJAJB_21 | 0.0 | 1.0 | 0.0 |
| POMNJAJB_22 | 0.0 | 1.0 | 0.0 |
| POMNJAJB_23 | 0.0 | 1.0 | 0.0 |
| POMNJAJB_24 | 0.0 | 1.0 | 0.0 |
| POMNJAJB_25 | 0.0 | 1.0 | 0.0 |
| POMNJAJB_26 | 0.0 | 1.0 | 0.0 |
| POMNJAJB_27 | 0.0 | 1.0 | 0.0 |
| POMNJAJB_28 | 0.0 | 1.0 | 0.0 |
| POMNJAJB_29 | 1.0 | 0.0 | 1.0 |
| POMNJAJB_31 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| POMNJAJB_8 | 5382 | 32058 | False | Siphoviridae | VOG0198, VOG4841, VOG0741, VOG7810, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG4686, VOG4605, VOG4605, VOG4599, VOG10957, VOG8870, VOG9998 |
| POMNJAJB_13 | 66398 | 78406 | False | Siphoviridae | VOG6005, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207 |
| POMNJAJB_22 | 246055 | 267885 | False | Siphoviridae | VOG9998, VOG10957, VOG4599, VOG4605, VOG5904, VOG4545, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG4553, VOG4556, VOG0202, VOG1886, VOG4581, VOG6221, VOG7800 |
| POMNJAJB_24 | 171073 | 199481 | False | Siphoviridae | VOG0054, VOG1637, VOG8294, VOG3498, VOG10608, VOG1335, VOG4545, VOG1333, VOG4634, VOG0704, VOG1330, VOG4713, VOG1887, VOG3434, VOG10914, VOG4564, VOG0720, VOG4544, VOG0796, VOG9295 |
Phigaro v2.4.0 (Database: Jan. 2024 release)