Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JNGOJMDL_81 | 121057 | 121761 | WalR | 9.09e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| JNGOJMDL_9 | 7021 | 7215 | CspR | 9.33e-31 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| JNGOJMDL_9 | 7021 | 7218 | CspA | 1.43e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JNGOJMDL_1 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_2 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_3 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_5 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_6 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_7 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_9 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_10 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_11 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_12 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_14 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_15 | 1.0 | 0.0 | 1.0 |
| JNGOJMDL_16 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_17 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_18 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_19 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_20 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_23 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_27 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_28 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_30 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_32 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_35 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_38 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_41 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_42 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_43 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_46 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_48 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_50 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_51 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_52 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_54 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_55 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_57 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_59 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_60 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_61 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_62 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_63 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_64 | 1.0 | 0.0 | 1.0 |
| JNGOJMDL_65 | 1.0 | 0.0 | 1.0 |
| JNGOJMDL_67 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_68 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_69 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_70 | 1.0 | 0.0 | 1.0 |
| JNGOJMDL_71 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_73 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_74 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_75 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_78 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_79 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_80 | 1.0 | 0.0 | 1.0 |
| JNGOJMDL_81 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_82 | 0.0 | 1.0 | 0.0 |
| JNGOJMDL_83 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JNGOJMDL_6 | 166911 | 197609 | False | Siphoviridae | VOG10957, VOG4599, VOG4605, VOG5904, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG7466, VOG0198, VOG4799, VOG0514, VOG0226, VOG0283, VOG0685, VOG1302 |
| JNGOJMDL_19 | 66501 | 94518 | False | Siphoviridae | VOG0602, VOG1637, VOG8917, VOG9997, VOG3498, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844, VOG4673, VOG3643, VOG0044, VOG0327, VOG4609, VOG4632, VOG6545 |
| JNGOJMDL_81 | 108964 | 120137 | False | Siphoviridae | VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568, VOG0204, VOG0198 |
Phigaro v2.4.0 (Database: Jan. 2024 release)