Probiotic potential risk score


ARGs VFs PGs PPRS
1010916.76

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
HFNFGPLJ_1932981330733mphKARO:3004541mphK98.68100.00CP010314.1
HFNFGPLJ_1921049011929lmrBARO:3002813lmrB99.58100.42JYFL01000006.1
HFNFGPLJ_107967110264tmrBARO:3003059tmrB99.49100.00AL009126.3
HFNFGPLJ_25868728074bltARO:3003006blt98.00100.00L32599.1
HFNFGPLJ_15561816519ykkCARO:3003063ykkC98.21100.00AL009126.1
HFNFGPLJ_15558646181ykkDARO:3003064ykkD98.10100.00AL009126.1
HFNFGPLJ_25945375391aadKARO:3002627aadK98.59100.00AL009126.1
HFNFGPLJ_118243470vmlRARO:3004476vmlR98.36100.18NC_000964.3
HFNFGPLJ_25515504120Bacillus subtilis mprFARO:3003324Bsub_mprF99.53100.00AL009126.3

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
HFNFGPLJ_25945375391aadKStreptomycin98.83100.00M26879
HFNFGPLJ_1932981330733mph(K)Spiramycin, Telithromycin98.05100.00NC_000964

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
HFNFGPLJ_1932981330721mphKmacrolide 2'-phosphotransferase MphKBLASTX98.6899.02WP_003246254.1
HFNFGPLJ_25945375388aadKaminoglycoside 6-adenylyltransferase AadKBLASTX98.59100.00WP_003229862.1
HFNFGPLJ_118243467vmlRABC-F type ribosomal protection protein VmlRBLASTX98.36100.00WP_003234144.1
HFNFGPLJ_801270413222satAstreptothricin N-acetyltransferase SatABLASTX90.75100.00WP_003242546.1

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
HFNFGPLJ_1451457515756capB0.0CapsuleImmune modulation99.66100.00NP_391471
HFNFGPLJ_22026003385dhbA0.0BacillibactinNutritional/Metabolic factor99.49100.00NP_391080
HFNFGPLJ_1451295014092capA0.0CapsuleImmune modulation99.30100.00NP_391469
HFNFGPLJ_219288410020dhbF0.0BacillibactinNutritional/Metabolic factor99.30100.00NP_391076
HFNFGPLJ_34414243187dep/capD0.0CapsuleImmune modulation99.04100.00NP_389723
HFNFGPLJ_21919262864dhbB0.0BacillibactinNutritional/Metabolic factor99.04100.00NP_391077
HFNFGPLJ_22034114355dhbC0.0BacillibactinNutritional/Metabolic factor98.9478.95NP_391079
HFNFGPLJ_2671273513376hlyIII0.0Hemolysin IIIExotoxin98.91100.00NP_390062
HFNFGPLJ_1451411114560capC0.0CapsuleImmune modulation98.89100.00NP_391470
HFNFGPLJ_2192791898dhbE0.0BacillibactinNutritional/Metabolic factor96.73100.00NP_391078

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
HFNFGPLJ_3132246721331tufA0.0elongation factor Tu84.9695.69AHM69299
HFNFGPLJ_3181120110332pdxS1.94e-151encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS83.4598.31ACE61268
HFNFGPLJ_1713045531231CodY8.91e-126nutrient-responsive regulator81.08100.00ACJ80679
HFNFGPLJ_272426995ClpP4.85e-101part of proteolytic complex81.0597.44BAB94595
HFNFGPLJ_3041817617784spxA12.63e-71redox-responsive transcription factor83.97100.00AAF21893
HFNFGPLJ_3041817617784spx1.57e-69essential gene which is a thiol/oxidative stress sensor80.15100.00BAB57159
HFNFGPLJ_31620242266SpoVG1.55e-39RNA-binding protein81.4879.41AAT02994
HFNFGPLJ_3283489834701CspA2.10e-32cold shock protein90.91100.00CAA62903
HFNFGPLJ_2672460624800CspD1.92e-29cold shock protein81.5498.48CAC99957
HFNFGPLJ_2715021696CspB1.20e-28cold shock protein83.0898.48CAD00094

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
HFNFGPLJ_345227394Col(SD853)168 / 19486.90NC015392

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
HFNFGPLJ_10.01.00.0
HFNFGPLJ_20.01.00.0
HFNFGPLJ_30.01.00.0
HFNFGPLJ_40.01.00.0
HFNFGPLJ_50.01.00.0
HFNFGPLJ_100.01.00.0
HFNFGPLJ_120.01.00.0
HFNFGPLJ_130.01.00.0
HFNFGPLJ_140.01.00.0
HFNFGPLJ_150.01.00.0
HFNFGPLJ_160.01.00.0
HFNFGPLJ_170.01.00.0
HFNFGPLJ_180.01.00.0
HFNFGPLJ_230.01.00.0
HFNFGPLJ_241.00.01.0
HFNFGPLJ_260.01.00.0
HFNFGPLJ_270.01.00.0
HFNFGPLJ_281.00.01.0
HFNFGPLJ_291.00.01.0
HFNFGPLJ_300.01.00.0
HFNFGPLJ_310.01.00.0
HFNFGPLJ_320.01.00.0
HFNFGPLJ_330.01.00.0
HFNFGPLJ_340.01.00.0
HFNFGPLJ_350.01.00.0
HFNFGPLJ_360.01.00.0
HFNFGPLJ_370.01.00.0
HFNFGPLJ_380.01.00.0
HFNFGPLJ_410.01.00.0
HFNFGPLJ_421.00.01.0
HFNFGPLJ_480.01.00.0
HFNFGPLJ_490.01.00.0
HFNFGPLJ_510.01.00.0
HFNFGPLJ_520.01.00.0
HFNFGPLJ_550.01.00.0
HFNFGPLJ_560.01.00.0
HFNFGPLJ_570.01.00.0
HFNFGPLJ_580.01.00.0
HFNFGPLJ_590.01.00.0
HFNFGPLJ_600.01.00.0
HFNFGPLJ_610.01.00.0
HFNFGPLJ_620.01.00.0
HFNFGPLJ_630.01.00.0
HFNFGPLJ_640.01.00.0
HFNFGPLJ_660.01.00.0
HFNFGPLJ_740.01.00.0
HFNFGPLJ_750.01.00.0
HFNFGPLJ_760.01.00.0
HFNFGPLJ_770.01.00.0
HFNFGPLJ_780.01.00.0
HFNFGPLJ_790.01.00.0
HFNFGPLJ_800.01.00.0
HFNFGPLJ_810.01.00.0
HFNFGPLJ_830.01.00.0
HFNFGPLJ_840.01.00.0
HFNFGPLJ_850.01.00.0
HFNFGPLJ_860.01.00.0
HFNFGPLJ_870.01.00.0
HFNFGPLJ_880.01.00.0
HFNFGPLJ_890.01.00.0
HFNFGPLJ_941.00.01.0
HFNFGPLJ_951.00.01.0
HFNFGPLJ_960.01.00.0
HFNFGPLJ_970.01.00.0
HFNFGPLJ_980.01.00.0
HFNFGPLJ_990.01.00.0
HFNFGPLJ_1000.01.00.0
HFNFGPLJ_1030.01.00.0
HFNFGPLJ_1060.01.00.0
HFNFGPLJ_1070.01.00.0
HFNFGPLJ_1090.01.00.0
HFNFGPLJ_1120.01.00.0
HFNFGPLJ_1130.01.00.0
HFNFGPLJ_1140.01.00.0
HFNFGPLJ_1150.01.00.0
HFNFGPLJ_1160.01.00.0
HFNFGPLJ_1170.01.00.0
HFNFGPLJ_1200.01.00.0
HFNFGPLJ_1220.01.00.0
HFNFGPLJ_1230.01.00.0
HFNFGPLJ_1240.01.00.0
HFNFGPLJ_1260.01.00.0
HFNFGPLJ_1280.01.00.0
HFNFGPLJ_1290.01.00.0
HFNFGPLJ_1300.01.00.0
HFNFGPLJ_1310.01.00.0
HFNFGPLJ_1320.01.00.0
HFNFGPLJ_1330.01.00.0
HFNFGPLJ_1340.01.00.0
HFNFGPLJ_1350.01.00.0
HFNFGPLJ_1360.01.00.0
HFNFGPLJ_1370.01.00.0
HFNFGPLJ_1380.01.00.0
HFNFGPLJ_1390.01.00.0
HFNFGPLJ_1400.01.00.0
HFNFGPLJ_1410.01.00.0
HFNFGPLJ_1420.01.00.0
HFNFGPLJ_1430.01.00.0
HFNFGPLJ_1440.01.00.0
HFNFGPLJ_1450.01.00.0
HFNFGPLJ_1460.01.00.0
HFNFGPLJ_1480.01.00.0
HFNFGPLJ_1490.01.00.0
HFNFGPLJ_1500.01.00.0
HFNFGPLJ_1510.01.00.0
HFNFGPLJ_1520.01.00.0
HFNFGPLJ_1530.01.00.0
HFNFGPLJ_1540.01.00.0
HFNFGPLJ_1550.01.00.0
HFNFGPLJ_1560.01.00.0
HFNFGPLJ_1570.01.00.0
HFNFGPLJ_1580.01.00.0
HFNFGPLJ_1590.01.00.0
HFNFGPLJ_1600.01.00.0
HFNFGPLJ_1610.01.00.0
HFNFGPLJ_1620.01.00.0
HFNFGPLJ_1640.01.00.0
HFNFGPLJ_1661.00.01.0
HFNFGPLJ_1670.01.00.0
HFNFGPLJ_1690.01.00.0
HFNFGPLJ_1700.01.00.0
HFNFGPLJ_1710.01.00.0
HFNFGPLJ_1720.01.00.0
HFNFGPLJ_1730.01.00.0
HFNFGPLJ_1740.01.00.0
HFNFGPLJ_1750.01.00.0
HFNFGPLJ_1760.01.00.0
HFNFGPLJ_1770.01.00.0
HFNFGPLJ_1790.01.00.0
HFNFGPLJ_1800.01.00.0
HFNFGPLJ_1810.01.00.0
HFNFGPLJ_1820.01.00.0
HFNFGPLJ_1830.01.00.0
HFNFGPLJ_1840.01.00.0
HFNFGPLJ_1861.00.01.0
HFNFGPLJ_1880.01.00.0
HFNFGPLJ_1890.01.00.0
HFNFGPLJ_1900.01.00.0
HFNFGPLJ_1910.01.00.0
HFNFGPLJ_1920.01.00.0
HFNFGPLJ_1930.01.00.0
HFNFGPLJ_1950.01.00.0
HFNFGPLJ_1961.00.01.0
HFNFGPLJ_1980.01.00.0
HFNFGPLJ_1990.01.00.0
HFNFGPLJ_2000.01.00.0
HFNFGPLJ_2020.01.00.0
HFNFGPLJ_2030.01.00.0
HFNFGPLJ_2060.01.00.0
HFNFGPLJ_2080.01.00.0
HFNFGPLJ_2090.01.00.0
HFNFGPLJ_2100.01.00.0
HFNFGPLJ_2120.01.00.0
HFNFGPLJ_2130.01.00.0
HFNFGPLJ_2150.01.00.0
HFNFGPLJ_2160.01.00.0
HFNFGPLJ_2170.01.00.0
HFNFGPLJ_2180.01.00.0
HFNFGPLJ_2190.01.00.0
HFNFGPLJ_2200.01.00.0
HFNFGPLJ_2210.01.00.0
HFNFGPLJ_2220.01.00.0
HFNFGPLJ_2241.00.01.0
HFNFGPLJ_2250.01.00.0
HFNFGPLJ_2260.01.00.0
HFNFGPLJ_2270.01.00.0
HFNFGPLJ_2280.01.00.0
HFNFGPLJ_2290.01.00.0
HFNFGPLJ_2300.01.00.0
HFNFGPLJ_2310.01.00.0
HFNFGPLJ_2320.01.00.0
HFNFGPLJ_2330.01.00.0
HFNFGPLJ_2340.01.00.0
HFNFGPLJ_2350.01.00.0
HFNFGPLJ_2360.01.00.0
HFNFGPLJ_2370.01.00.0
HFNFGPLJ_2380.01.00.0
HFNFGPLJ_2401.00.01.0
HFNFGPLJ_2410.01.00.0
HFNFGPLJ_2420.01.00.0
HFNFGPLJ_2430.01.00.0
HFNFGPLJ_2440.01.00.0
HFNFGPLJ_2450.01.00.0
HFNFGPLJ_2460.01.00.0
HFNFGPLJ_2470.01.00.0
HFNFGPLJ_2480.01.00.0
HFNFGPLJ_2490.01.00.0
HFNFGPLJ_2500.01.00.0
HFNFGPLJ_2510.01.00.0
HFNFGPLJ_2520.01.00.0
HFNFGPLJ_2530.01.00.0
HFNFGPLJ_2540.01.00.0
HFNFGPLJ_2550.01.00.0
HFNFGPLJ_2560.01.00.0
HFNFGPLJ_2570.01.00.0
HFNFGPLJ_2580.01.00.0
HFNFGPLJ_2590.01.00.0
HFNFGPLJ_2600.01.00.0
HFNFGPLJ_2610.01.00.0
HFNFGPLJ_2620.01.00.0
HFNFGPLJ_2630.01.00.0
HFNFGPLJ_2640.01.00.0
HFNFGPLJ_2650.01.00.0
HFNFGPLJ_2660.01.00.0
HFNFGPLJ_2670.01.00.0
HFNFGPLJ_2680.01.00.0
HFNFGPLJ_2690.01.00.0
HFNFGPLJ_2700.01.00.0
HFNFGPLJ_2710.01.00.0
HFNFGPLJ_2720.01.00.0
HFNFGPLJ_2730.01.00.0
HFNFGPLJ_2740.01.00.0
HFNFGPLJ_2750.01.00.0
HFNFGPLJ_2760.01.00.0
HFNFGPLJ_2771.00.01.0
HFNFGPLJ_2780.01.00.0
HFNFGPLJ_2790.01.00.0
HFNFGPLJ_2800.01.00.0
HFNFGPLJ_2810.01.00.0
HFNFGPLJ_2820.01.00.0
HFNFGPLJ_2830.01.00.0
HFNFGPLJ_2840.01.00.0
HFNFGPLJ_2850.01.00.0
HFNFGPLJ_2860.01.00.0
HFNFGPLJ_2870.01.00.0
HFNFGPLJ_2890.01.00.0
HFNFGPLJ_2900.01.00.0
HFNFGPLJ_2910.01.00.0
HFNFGPLJ_2920.01.00.0
HFNFGPLJ_2930.01.00.0
HFNFGPLJ_2940.01.00.0
HFNFGPLJ_2950.01.00.0
HFNFGPLJ_2960.01.00.0
HFNFGPLJ_2971.00.01.0
HFNFGPLJ_2980.01.00.0
HFNFGPLJ_2990.01.00.0
HFNFGPLJ_3001.00.01.0
HFNFGPLJ_3010.01.00.0
HFNFGPLJ_3020.01.00.0
HFNFGPLJ_3030.01.00.0
HFNFGPLJ_3040.01.00.0
HFNFGPLJ_3050.01.00.0
HFNFGPLJ_3071.00.01.0
HFNFGPLJ_3091.00.01.0
HFNFGPLJ_3100.01.00.0
HFNFGPLJ_3110.01.00.0
HFNFGPLJ_3121.00.01.0
HFNFGPLJ_3130.01.00.0
HFNFGPLJ_3140.01.00.0
HFNFGPLJ_3150.01.00.0
HFNFGPLJ_3160.01.00.0
HFNFGPLJ_3170.01.00.0
HFNFGPLJ_3180.01.00.0
HFNFGPLJ_3201.00.01.0
HFNFGPLJ_3211.00.01.0
HFNFGPLJ_3220.01.00.0
HFNFGPLJ_3230.01.00.0
HFNFGPLJ_3240.01.00.0
HFNFGPLJ_3250.01.00.0
HFNFGPLJ_3260.01.00.0
HFNFGPLJ_3270.01.00.0
HFNFGPLJ_3280.01.00.0
HFNFGPLJ_3290.01.00.0
HFNFGPLJ_3320.01.00.0
HFNFGPLJ_3330.01.00.0
HFNFGPLJ_3340.01.00.0
HFNFGPLJ_3350.01.00.0
HFNFGPLJ_3360.01.00.0
HFNFGPLJ_3371.00.01.0
HFNFGPLJ_3381.00.01.0
HFNFGPLJ_3391.00.01.0
HFNFGPLJ_3401.00.01.0
HFNFGPLJ_3411.00.01.0
HFNFGPLJ_3420.01.00.0
HFNFGPLJ_3430.01.00.0
HFNFGPLJ_3440.01.00.0
HFNFGPLJ_3451.00.01.0
HFNFGPLJ_3460.01.00.0
HFNFGPLJ_3470.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
HFNFGPLJ_292554917646TrueSiphoviridaeVOG3490, VOG0275, VOG0275, VOG1563, VOG9667, VOG9667, VOG7581, VOG4566, VOG0189, VOG6587, VOG0102, VOG1336, VOG0245
HFNFGPLJ_32250337680FalseUnknownVOG4552, VOG6495, VOG9667
HFNFGPLJ_343917715481FalseSiphoviridaeVOG4319, VOG9317, VOG0692, VOG2613, VOG3699

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements