Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IHEPNEOK_13 | 1760 | 2620 | TEM-116 | ARO:3000979 | TEM-116 | 100.00 | 100.00 | U36911.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IHEPNEOK_13 | 1760 | 2620 | blaTEM-116 | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin | 100.00 | 100.00 | AY425988 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IHEPNEOK_13 | 1760 | 2617 | blaTEM-116 | broad-spectrum class A beta-lactamase TEM-116 | ALLELEX | 100.00 | 100.00 | WP_000027050.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| IHEPNEOK_13 | 349 | 479 | ColRNAI | 131 / 130 | 87.02 | DQ298019 |
| IHEPNEOK_3 | 110111 | 110999 | rep38 | 898 / 903 | 82.18 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IHEPNEOK_2 | 0.0 | 1.0 | 0.0 |
| IHEPNEOK_3 | 0.0 | 1.0 | 0.0 |
| IHEPNEOK_4 | 0.0 | 1.0 | 0.0 |
| IHEPNEOK_5 | 0.0 | 1.0 | 0.0 |
| IHEPNEOK_6 | 0.0 | 1.0 | 0.0 |
| IHEPNEOK_7 | 0.0 | 1.0 | 0.0 |
| IHEPNEOK_8 | 0.0 | 1.0 | 0.0 |
| IHEPNEOK_9 | 0.0 | 1.0 | 0.0 |
| IHEPNEOK_10 | 0.0 | 1.0 | 0.0 |
| IHEPNEOK_11 | 0.0 | 1.0 | 0.0 |
| IHEPNEOK_12 | 0.0 | 1.0 | 0.0 |
| IHEPNEOK_13 | 1.0 | 0.0 | 1.0 |
| IHEPNEOK_14 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IHEPNEOK_2 | 543440 | 584152 | False | Myoviridae | VOG0275, VOG0862, VOG9667, VOG0010, VOG8241, VOG9708, VOG0322, VOG4548, VOG6545, VOG4606, VOG0327, VOG6952, VOG0600, VOG6951, VOG0198, VOG0796, VOG5681, VOG0720, VOG4564, VOG4555, VOG4572, VOG4623, VOG3888, VOG1900, VOG4870, VOG5612, VOG3890, VOG3891, VOG3892, VOG5793, VOG4865, VOG4885, VOG3894, VOG9719, VOG4691, VOG4862, VOG10972, VOG9945, VOG4705, VOG0861, VOG3424, VOG0703, VOG4824, VOG9998, VOG9474, VOG0413 |
| IHEPNEOK_6 | 18695 | 29886 | False | Myoviridae | VOG4548, VOG6085, VOG6396, VOG4410, VOG4927, VOG0996, VOG4178, VOG0382 |
Phigaro v2.4.0 (Database: Jan. 2024 release)