Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 10 | 10.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| BCAJHICB_60 | 43786 | 42608 | tufA | 0.0 | elongation factor Tu | 85.75 | 99.49 | AHM69299 |
| BCAJHICB_69 | 27011 | 28516 | atpA | 0.0 | ATP synthase subunit alpha | 80.08 | 100.00 | ABD31377 |
| BCAJHICB_62 | 7629 | 6760 | pdxS | 1.11e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| BCAJHICB_2 | 5190 | 4414 | CodY | 1.09e-128 | nutrient-responsive regulator | 81.85 | 100.00 | ACJ80679 |
| BCAJHICB_2 | 5190 | 4414 | codY | 5.27e-125 | global regulator and isoleucine sensor | 80.69 | 100.00 | ASW39076 |
| BCAJHICB_14 | 714 | 1283 | ClpP | 1.21e-104 | part of proteolytic complex | 83.68 | 97.44 | BAB94595 |
| BCAJHICB_64 | 37923 | 38609 | WalR | 6.99e-104 | transcriptional regulatory protein | 80.79 | 97.44 | EPH95667 |
| BCAJHICB_13 | 7271 | 6879 | spxA1 | 7.89e-73 | redox-responsive transcription factor | 88.55 | 100.00 | AAF21893 |
| BCAJHICB_13 | 7271 | 6879 | spx | 1.71e-67 | essential gene which is a thiol/oxidative stress sensor | 80.92 | 100.00 | BAB57159 |
| BCAJHICB_63 | 33734 | 33492 | SpoVG | 7.97e-40 | RNA-binding protein | 82.72 | 79.41 | AAT02994 |
| BCAJHICB_85 | 9021 | 8824 | CspA | 2.98e-30 | cold shock protein | 83.33 | 100.00 | CAA62903 |
| BCAJHICB_142 | 46826 | 47020 | CspD | 9.87e-30 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| BCAJHICB_142 | 46826 | 47023 | CspB | 6.63e-29 | cold shock protein | 80.30 | 100.00 | CAD00094 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BCAJHICB_1 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_2 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_3 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_4 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_5 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_6 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_7 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_8 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_9 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_10 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_11 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_12 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_13 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_14 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_15 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_16 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_17 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_18 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_19 | 1.0 | 0.0 | 1.0 |
| BCAJHICB_20 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_21 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_22 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_23 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_24 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_25 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_26 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_27 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_30 | 1.0 | 0.0 | 1.0 |
| BCAJHICB_31 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_32 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_33 | 1.0 | 0.0 | 1.0 |
| BCAJHICB_35 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_36 | 1.0 | 0.0 | 1.0 |
| BCAJHICB_37 | 1.0 | 0.0 | 1.0 |
| BCAJHICB_38 | 1.0 | 0.0 | 1.0 |
| BCAJHICB_39 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_41 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_42 | 1.0 | 0.0 | 1.0 |
| BCAJHICB_43 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_44 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_45 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_46 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_47 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_48 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_49 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_50 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_51 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_52 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_54 | 1.0 | 0.0 | 1.0 |
| BCAJHICB_55 | 1.0 | 0.0 | 1.0 |
| BCAJHICB_57 | 1.0 | 0.0 | 1.0 |
| BCAJHICB_58 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_60 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_61 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_62 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_63 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_64 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_65 | 1.0 | 0.0 | 1.0 |
| BCAJHICB_66 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_67 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_68 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_69 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_71 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_72 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_73 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_74 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_75 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_77 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_78 | 1.0 | 0.0 | 1.0 |
| BCAJHICB_79 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_80 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_81 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_82 | 1.0 | 0.0 | 1.0 |
| BCAJHICB_83 | 1.0 | 0.0 | 1.0 |
| BCAJHICB_84 | 1.0 | 0.0 | 1.0 |
| BCAJHICB_85 | 1.0 | 0.0 | 1.0 |
| BCAJHICB_86 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_87 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_88 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_89 | 1.0 | 0.0 | 1.0 |
| BCAJHICB_92 | 1.0 | 0.0 | 1.0 |
| BCAJHICB_93 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_94 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_95 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_96 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_97 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_98 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_100 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_101 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_102 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_103 | 1.0 | 0.0 | 1.0 |
| BCAJHICB_104 | 1.0 | 0.0 | 1.0 |
| BCAJHICB_108 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_109 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_110 | 1.0 | 0.0 | 1.0 |
| BCAJHICB_111 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_112 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_113 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_115 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_116 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_117 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_118 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_119 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_120 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_121 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_122 | 1.0 | 0.0 | 1.0 |
| BCAJHICB_123 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_124 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_125 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_126 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_127 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_128 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_129 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_130 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_131 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_132 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_133 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_134 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_135 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_136 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_137 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_138 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_139 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_140 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_141 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_142 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_143 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_144 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_146 | 1.0 | 0.0 | 1.0 |
| BCAJHICB_147 | 1.0 | 0.0 | 1.0 |
| BCAJHICB_148 | 1.0 | 0.0 | 1.0 |
| BCAJHICB_152 | 1.0 | 0.0 | 1.0 |
| BCAJHICB_153 | 1.0 | 0.0 | 1.0 |
| BCAJHICB_157 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_161 | 1.0 | 0.0 | 1.0 |
| BCAJHICB_166 | 1.0 | 0.0 | 1.0 |
| BCAJHICB_176 | 1.0 | 0.0 | 1.0 |
| BCAJHICB_180 | 1.0 | 0.0 | 1.0 |
| BCAJHICB_190 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_191 | 0.0 | 1.0 | 0.0 |
| BCAJHICB_199 | 1.0 | 0.0 | 1.0 |
| BCAJHICB_209 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BCAJHICB_58 | 17803 | 49264 | False | Siphoviridae | VOG4660, VOG6373, VOG4619, VOG0801, VOG6163, VOG4557, VOG5660, VOG3888, VOG1581, VOG4711, VOG3210, VOG4568, VOG7708, VOG7407, VOG0611, VOG0198, VOG8445, VOG3553, VOG1298, VOG6440, VOG0195, VOG0536, VOG0397, VOG9996, VOG0025, VOG9600, VOG4855, VOG1309, VOG4600, VOG1878, VOG3549, VOG8241, VOG4552, VOG9667, VOG9667 |
| BCAJHICB_136 | 23697 | 31617 | False | Siphoviridae | VOG6778, VOG0275, VOG4602, VOG4548, VOG0982 |
| BCAJHICB_137 | 4114 | 27360 | False | Siphoviridae | VOG4552, VOG0198, VOG0275, VOG4841, VOG4581, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0704, VOG4586, VOG5852, VOG6163, VOG0801, VOG3462, VOG8438, VOG6243, VOG8580, VOG0753, VOG0136, VOG4918 |
Phigaro v2.4.0 (Database: Jan. 2024 release)