Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JGLMIDLA_1 | 37778 | 38482 | WalR | 1.86e-113 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JGLMIDLA_7 | 2054 | 2956 | rep38 | 903 / 903 | 99.34 | CP005943 |
| JGLMIDLA_3 | 1 | 930 | rep28 | 930 / 930 | 97.74 | CP003162 |
| JGLMIDLA_1 | 3359306 | 3360130 | repUS64 | 826 / 954 | 94.55 | JN601038 |
| JGLMIDLA_5 | 19762 | 20862 | repUS73 | 1101 / 1101 | 94.46 | CP002654 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JGLMIDLA_1 | 0.0 | 1.0 | 0.0 |
| JGLMIDLA_2 | 1.0 | 0.0 | 1.0 |
| JGLMIDLA_3 | 1.0 | 0.0 | 1.0 |
| JGLMIDLA_4 | 1.0 | 0.0 | 1.0 |
| JGLMIDLA_5 | 1.0 | 0.0 | 1.0 |
| JGLMIDLA_6 | 1.0 | 0.0 | 1.0 |
| JGLMIDLA_7 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JGLMIDLA_1 | 1011646 | 1038370 | False | Siphoviridae | VOG0044, VOG1183, VOG0634, VOG0198, VOG4841, VOG0741, VOG0468, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG5904, VOG4605, VOG4599, VOG10957, VOG8870 |
| JGLMIDLA_1 | 2127415 | 2159339 | False | Siphoviridae | VOG4918, VOG5361, VOG4705, VOG9741, VOG4619, VOG0801, VOG6163, VOG0701, VOG9763, VOG6548, VOG0697, VOG0696, VOG0695, VOG4711, VOG9317, VOG0692, VOG0691, VOG0796, VOG0045, VOG0198, VOG3643, VOG0044, VOG4693, VOG4566, VOG0186, VOG1309 |
| JGLMIDLA_1 | 2159710 | 2161688 | False | Siphoviridae | VOG0181, VOG6495 |
| JGLMIDLA_1 | 3240203 | 3260315 | False | Siphoviridae | VOG0602, VOG9888, VOG8917, VOG9997, VOG3498, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844 |
| JGLMIDLA_1 | 3267102 | 3272231 | False | Siphoviridae | VOG6545, VOG0322, VOG4548, VOG0321, VOG11016, VOG8925, VOG0181 |
Phigaro v2.4.0 (Database: Jan. 2024 release)