Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 10 | 10.05 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| FNFGACOM_2 | 57081 | 58281 | mef(A) | Erythromycin, Azithromycin | 94.67 | 98.60 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FNFGACOM_2 | 57078 | 58280 | mef(A) | macrolide efflux MFS transporter Mef(A) | INTERNAL_STOP | 98.75 | 98.28 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FNFGACOM_60 | 32442 | 33620 | tufA | 0.0 | elongation factor Tu | 85.75 | 99.49 | AHM69299 |
| FNFGACOM_65 | 28010 | 26505 | atpA | 0.0 | ATP synthase subunit alpha | 80.08 | 100.00 | ABD31377 |
| FNFGACOM_110 | 11552 | 10683 | pdxS | 1.51e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| FNFGACOM_85 | 23736 | 24512 | CodY | 3.16e-128 | nutrient-responsive regulator | 81.85 | 100.00 | ACJ80679 |
| FNFGACOM_85 | 23736 | 24512 | codY | 1.52e-124 | global regulator and isoleucine sensor | 80.69 | 100.00 | ASW39076 |
| FNFGACOM_115 | 13346 | 12777 | ClpP | 6.19e-105 | part of proteolytic complex | 83.16 | 97.44 | BAB94595 |
| FNFGACOM_107 | 68414 | 67728 | WalR | 8.64e-104 | transcriptional regulatory protein | 80.79 | 97.44 | EPH95667 |
| FNFGACOM_72 | 24355 | 23963 | spxA1 | 1.08e-72 | redox-responsive transcription factor | 87.79 | 100.00 | AAF21893 |
| FNFGACOM_72 | 24355 | 23963 | spx | 2.26e-67 | essential gene which is a thiol/oxidative stress sensor | 80.15 | 100.00 | BAB57159 |
| FNFGACOM_108 | 18643 | 18885 | SpoVG | 2.94e-40 | RNA-binding protein | 82.72 | 79.41 | AAT02994 |
| FNFGACOM_30 | 392 | 589 | CspA | 1.52e-31 | cold shock protein | 83.33 | 100.00 | CAA62903 |
| FNFGACOM_85 | 136067 | 135873 | CspD | 3.57e-29 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| FNFGACOM_85 | 136067 | 135870 | CspB | 2.40e-28 | cold shock protein | 80.30 | 100.00 | CAD00094 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FNFGACOM_1 | 1.0 | 0.0 | 1.0 |
| FNFGACOM_2 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_3 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_4 | 1.0 | 0.0 | 1.0 |
| FNFGACOM_5 | 1.0 | 0.0 | 1.0 |
| FNFGACOM_6 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_7 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_8 | 1.0 | 0.0 | 1.0 |
| FNFGACOM_9 | 1.0 | 0.0 | 1.0 |
| FNFGACOM_10 | 1.0 | 0.0 | 1.0 |
| FNFGACOM_11 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_12 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_13 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_14 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_15 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_16 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_17 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_18 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_19 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_20 | 1.0 | 0.0 | 1.0 |
| FNFGACOM_21 | 1.0 | 0.0 | 1.0 |
| FNFGACOM_22 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_23 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_24 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_25 | 1.0 | 0.0 | 1.0 |
| FNFGACOM_26 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_27 | 1.0 | 0.0 | 1.0 |
| FNFGACOM_28 | 1.0 | 0.0 | 1.0 |
| FNFGACOM_29 | 1.0 | 0.0 | 1.0 |
| FNFGACOM_30 | 1.0 | 0.0 | 1.0 |
| FNFGACOM_31 | 1.0 | 0.0 | 1.0 |
| FNFGACOM_32 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_36 | 1.0 | 0.0 | 1.0 |
| FNFGACOM_37 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_38 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_51 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_52 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_53 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_54 | 1.0 | 0.0 | 1.0 |
| FNFGACOM_55 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_56 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_57 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_58 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_59 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_60 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_61 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_62 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_63 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_64 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_65 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_66 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_67 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_68 | 1.0 | 0.0 | 1.0 |
| FNFGACOM_69 | 1.0 | 0.0 | 1.0 |
| FNFGACOM_70 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_71 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_72 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_73 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_74 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_75 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_76 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_77 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_78 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_79 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_80 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_81 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_82 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_83 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_84 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_85 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_86 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_87 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_89 | 1.0 | 0.0 | 1.0 |
| FNFGACOM_90 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_91 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_92 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_93 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_94 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_95 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_96 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_97 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_98 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_99 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_100 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_101 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_102 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_103 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_104 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_105 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_106 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_107 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_108 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_109 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_110 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_111 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_112 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_113 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_114 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_115 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_116 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_118 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_119 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_120 | 1.0 | 0.0 | 1.0 |
| FNFGACOM_121 | 1.0 | 0.0 | 1.0 |
| FNFGACOM_123 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_124 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_125 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_126 | 1.0 | 0.0 | 1.0 |
| FNFGACOM_127 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_128 | 1.0 | 0.0 | 1.0 |
| FNFGACOM_129 | 1.0 | 0.0 | 1.0 |
| FNFGACOM_130 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_131 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_133 | 1.0 | 0.0 | 1.0 |
| FNFGACOM_134 | 0.0 | 1.0 | 0.0 |
| FNFGACOM_137 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FNFGACOM_63 | 3638 | 34323 | False | Siphoviridae | VOG1309, VOG1292, VOG5617, VOG0044, VOG6440, VOG8445, VOG5447, VOG0796, VOG7407, VOG7708, VOG4568, VOG3210, VOG4711, VOG1581, VOG3888, VOG5660, VOG4621, VOG4557, VOG6163, VOG0801, VOG4619, VOG6373, VOG4626, VOG0753, VOG0054, VOG4615, VOG3424, VOG0705, VOG0706, VOG5460, VOG0221 |
Phigaro v2.4.0 (Database: Jan. 2024 release)