Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JAGJNHOF_30 | 45392 | 48955 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 92.82 | 100.08 | NC_008618.1 |
| JAGJNHOF_27 | 16691 | 17062 | Mycobacterium tuberculosis rpsL mutations conferring resistance to Streptomycin | ARO:3003395 | Mtub_rpsL_STR | 82.93 | 99.19 | NC_000962.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JAGJNHOF_1 | 0.0 | 1.0 | 0.0 |
| JAGJNHOF_2 | 0.0 | 1.0 | 0.0 |
| JAGJNHOF_3 | 0.0 | 1.0 | 0.0 |
| JAGJNHOF_4 | 0.0 | 1.0 | 0.0 |
| JAGJNHOF_5 | 0.0 | 1.0 | 0.0 |
| JAGJNHOF_6 | 0.0 | 1.0 | 0.0 |
| JAGJNHOF_7 | 0.0 | 1.0 | 0.0 |
| JAGJNHOF_8 | 0.0 | 1.0 | 0.0 |
| JAGJNHOF_9 | 0.0 | 1.0 | 0.0 |
| JAGJNHOF_10 | 0.0 | 1.0 | 0.0 |
| JAGJNHOF_11 | 0.0 | 1.0 | 0.0 |
| JAGJNHOF_12 | 0.0 | 1.0 | 0.0 |
| JAGJNHOF_13 | 0.0 | 1.0 | 0.0 |
| JAGJNHOF_14 | 0.0 | 1.0 | 0.0 |
| JAGJNHOF_15 | 1.0 | 0.0 | 1.0 |
| JAGJNHOF_16 | 0.0 | 1.0 | 0.0 |
| JAGJNHOF_17 | 0.0 | 1.0 | 0.0 |
| JAGJNHOF_18 | 1.0 | 0.0 | 1.0 |
| JAGJNHOF_19 | 1.0 | 0.0 | 1.0 |
| JAGJNHOF_20 | 1.0 | 0.0 | 1.0 |
| JAGJNHOF_21 | 0.0 | 1.0 | 0.0 |
| JAGJNHOF_22 | 0.0 | 1.0 | 0.0 |
| JAGJNHOF_23 | 1.0 | 0.0 | 1.0 |
| JAGJNHOF_24 | 0.0 | 1.0 | 0.0 |
| JAGJNHOF_25 | 0.0 | 1.0 | 0.0 |
| JAGJNHOF_26 | 0.0 | 1.0 | 0.0 |
| JAGJNHOF_27 | 0.0 | 1.0 | 0.0 |
| JAGJNHOF_28 | 1.0 | 0.0 | 1.0 |
| JAGJNHOF_29 | 0.0 | 1.0 | 0.0 |
| JAGJNHOF_30 | 0.0 | 1.0 | 0.0 |
| JAGJNHOF_31 | 1.0 | 0.0 | 1.0 |
| JAGJNHOF_32 | 1.0 | 0.0 | 1.0 |
| JAGJNHOF_33 | 0.0 | 1.0 | 0.0 |
| JAGJNHOF_34 | 0.0 | 1.0 | 0.0 |
| JAGJNHOF_35 | 0.0 | 1.0 | 0.0 |
| JAGJNHOF_36 | 0.0 | 1.0 | 0.0 |
| JAGJNHOF_37 | 1.0 | 0.0 | 1.0 |
| JAGJNHOF_38 | 0.0 | 1.0 | 0.0 |
| JAGJNHOF_39 | 1.0 | 0.0 | 1.0 |
| JAGJNHOF_40 | 0.0 | 1.0 | 0.0 |
| JAGJNHOF_41 | 0.0 | 1.0 | 0.0 |
| JAGJNHOF_42 | 0.0 | 1.0 | 0.0 |
| JAGJNHOF_43 | 0.0 | 1.0 | 0.0 |
| JAGJNHOF_44 | 1.0 | 0.0 | 1.0 |
| JAGJNHOF_45 | 0.0 | 1.0 | 0.0 |
| JAGJNHOF_46 | 0.0 | 1.0 | 0.0 |
| JAGJNHOF_47 | 0.0 | 1.0 | 0.0 |
| JAGJNHOF_48 | 0.0 | 1.0 | 0.0 |
| JAGJNHOF_49 | 0.0 | 1.0 | 0.0 |
| JAGJNHOF_50 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JAGJNHOF_17 | 59697 | 81089 | False | Siphoviridae | VOG4728, VOG4598, VOG3416, VOG9722, VOG3653, VOG6163, VOG5601, VOG1581, VOG4553, VOG4555, VOG0720, VOG5101 |
| JAGJNHOF_22 | 101893 | 107732 | False | Siphoviridae | VOG2485, VOG8271, VOG2038, VOG4552, VOG4567, VOG5091, VOG4552 |
| JAGJNHOF_22 | 114905 | 128598 | False | Siphoviridae | VOG9502, VOG6495, VOG4841, VOG6459, VOG1574, VOG5101, VOG0720, VOG2806, VOG4555, VOG3434, VOG1887, VOG1581 |
| JAGJNHOF_25 | 250485 | 264815 | False | Siphoviridae | VOG7454, VOG1154, VOG4544, VOG0720, VOG4576, VOG4555, VOG4553, VOG5504, VOG1581, VOG3409, VOG1159, VOG4621, VOG4557, VOG3651, VOG4582, VOG5793 |
Phigaro v2.4.0 (Database: Jan. 2024 release)