Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MHFCAHFK_8 | 87955 | 88659 | WalR | 8.95e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| MHFCAHFK_3 | 154606 | 154412 | CspR | 1.63e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| MHFCAHFK_3 | 154606 | 154409 | CspA | 2.50e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| MHFCAHFK_22 | 36383 | 37286 | rep38 | 904 / 903 | 99.23 | CP005943 |
| MHFCAHFK_25 | 12000 | 12784 | rep28 | 786 / 930 | 98.09 | CP003162 |
| MHFCAHFK_31 | 617 | 1570 | repUS64 | 954 / 954 | 97.90 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MHFCAHFK_1 | 0.0 | 1.0 | 0.0 |
| MHFCAHFK_2 | 0.0 | 1.0 | 0.0 |
| MHFCAHFK_3 | 0.0 | 1.0 | 0.0 |
| MHFCAHFK_4 | 0.0 | 1.0 | 0.0 |
| MHFCAHFK_5 | 0.0 | 1.0 | 0.0 |
| MHFCAHFK_6 | 0.0 | 1.0 | 0.0 |
| MHFCAHFK_7 | 0.0 | 1.0 | 0.0 |
| MHFCAHFK_8 | 0.0 | 1.0 | 0.0 |
| MHFCAHFK_9 | 0.0 | 1.0 | 0.0 |
| MHFCAHFK_10 | 0.0 | 1.0 | 0.0 |
| MHFCAHFK_11 | 0.0 | 1.0 | 0.0 |
| MHFCAHFK_12 | 0.0 | 1.0 | 0.0 |
| MHFCAHFK_13 | 1.0 | 0.0 | 1.0 |
| MHFCAHFK_14 | 0.0 | 1.0 | 0.0 |
| MHFCAHFK_15 | 1.0 | 0.0 | 1.0 |
| MHFCAHFK_16 | 0.0 | 1.0 | 0.0 |
| MHFCAHFK_17 | 0.0 | 1.0 | 0.0 |
| MHFCAHFK_18 | 0.0 | 1.0 | 0.0 |
| MHFCAHFK_19 | 0.0 | 1.0 | 0.0 |
| MHFCAHFK_20 | 0.0 | 1.0 | 0.0 |
| MHFCAHFK_21 | 1.0 | 0.0 | 1.0 |
| MHFCAHFK_22 | 1.0 | 0.0 | 1.0 |
| MHFCAHFK_23 | 0.0 | 1.0 | 0.0 |
| MHFCAHFK_24 | 0.0 | 1.0 | 0.0 |
| MHFCAHFK_25 | 1.0 | 0.0 | 1.0 |
| MHFCAHFK_26 | 0.0 | 1.0 | 0.0 |
| MHFCAHFK_27 | 0.0 | 1.0 | 0.0 |
| MHFCAHFK_28 | 1.0 | 0.0 | 1.0 |
| MHFCAHFK_29 | 1.0 | 0.0 | 1.0 |
| MHFCAHFK_31 | 1.0 | 0.0 | 1.0 |
| MHFCAHFK_33 | 1.0 | 0.0 | 1.0 |
| MHFCAHFK_34 | 1.0 | 0.0 | 1.0 |
| MHFCAHFK_35 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MHFCAHFK_4 | 150637 | 202641 | False | Siphoviridae | VOG0054, VOG1637, VOG8294, VOG4705, VOG0804, VOG0870, VOG8438, VOG4619, VOG0801, VOG6163, VOG0701, VOG8357, VOG6548, VOG0697, VOG0696, VOG0695, VOG4711, VOG9317, VOG0692, VOG0691, VOG0796, VOG5709, VOG3015, VOG0198, VOG1049, VOG0044, VOG4693, VOG4552, VOG0189, VOG4855, VOG0226, VOG0283, VOG0535, VOG7298, VOG0181, VOG3556, VOG6495, VOG4602, VOG7656, VOG7395, VOG0275, VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632 |
| MHFCAHFK_8 | 76604 | 86222 | False | Siphoviridae | VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG0204 |
| MHFCAHFK_10 | 66618 | 93602 | False | Siphoviridae | VOG0189, VOG0713, VOG0054, VOG1637, VOG8294, VOG4705, VOG0804, VOG9640, VOG4856, VOG4619, VOG4599, VOG4633, VOG6163, VOG0725, VOG0799, VOG0724, VOG9583, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG3381, VOG0198, VOG1049, VOG3643, VOG0044 |
Phigaro v2.4.0 (Database: Jan. 2024 release)