Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PBFFIIAG_11 | 83113 | 82412 | WalR | 1.55e-107 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PBFFIIAG_14 | 230 | 360 | ColRNAI | 131 / 130 | 87.02 | DQ298019 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PBFFIIAG_1 | 0.0 | 1.0 | 0.0 |
| PBFFIIAG_2 | 0.0 | 1.0 | 0.0 |
| PBFFIIAG_3 | 0.0 | 1.0 | 0.0 |
| PBFFIIAG_4 | 1.0 | 0.0 | 1.0 |
| PBFFIIAG_5 | 0.0 | 1.0 | 0.0 |
| PBFFIIAG_6 | 1.0 | 0.0 | 1.0 |
| PBFFIIAG_7 | 0.0 | 1.0 | 0.0 |
| PBFFIIAG_8 | 1.0 | 0.0 | 1.0 |
| PBFFIIAG_9 | 0.0 | 1.0 | 0.0 |
| PBFFIIAG_10 | 0.0 | 1.0 | 0.0 |
| PBFFIIAG_11 | 0.0 | 1.0 | 0.0 |
| PBFFIIAG_12 | 0.0 | 1.0 | 0.0 |
| PBFFIIAG_13 | 1.0 | 0.0 | 1.0 |
| PBFFIIAG_15 | 1.0 | 0.0 | 1.0 |
| PBFFIIAG_16 | 0.0 | 1.0 | 0.0 |
| PBFFIIAG_17 | 0.0 | 1.0 | 0.0 |
| PBFFIIAG_18 | 0.0 | 1.0 | 0.0 |
| PBFFIIAG_19 | 0.0 | 1.0 | 0.0 |
| PBFFIIAG_20 | 0.0 | 1.0 | 0.0 |
| PBFFIIAG_21 | 1.0 | 0.0 | 1.0 |
| PBFFIIAG_22 | 0.0 | 1.0 | 0.0 |
| PBFFIIAG_23 | 1.0 | 0.0 | 1.0 |
| PBFFIIAG_24 | 1.0 | 0.0 | 1.0 |
| PBFFIIAG_25 | 0.0 | 1.0 | 0.0 |
| PBFFIIAG_26 | 1.0 | 0.0 | 1.0 |
| PBFFIIAG_27 | 0.0 | 1.0 | 0.0 |
| PBFFIIAG_28 | 0.0 | 1.0 | 0.0 |
| PBFFIIAG_29 | 0.0 | 1.0 | 0.0 |
| PBFFIIAG_30 | 0.0 | 1.0 | 0.0 |
| PBFFIIAG_31 | 0.0 | 1.0 | 0.0 |
| PBFFIIAG_32 | 0.0 | 1.0 | 0.0 |
| PBFFIIAG_33 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PBFFIIAG_11 | 983347 | 987275 | False | Unknown | VOG6914, VOG6965, VOG1656, VOG4552 |
| PBFFIIAG_30 | 7340 | 13044 | False | Siphoviridae | VOG4544, VOG5051, VOG4556, VOG4556, VOG4568, VOG0204, VOG0198 |
Phigaro v2.4.0 (Database: Jan. 2024 release)