Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DEFMPCGG_44 | 17105 | 17806 | WalR | 3.70e-109 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| DEFMPCGG_8 | 1106 | 2035 | rep28 | 930 / 930 | 99.57 | CP003162 |
| DEFMPCGG_7 | 2395 | 3350 | repUS64 | 959 / 954 | 81.13 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DEFMPCGG_1 | 1.0 | 0.0 | 1.0 |
| DEFMPCGG_2 | 1.0 | 0.0 | 1.0 |
| DEFMPCGG_3 | 1.0 | 0.0 | 1.0 |
| DEFMPCGG_4 | 1.0 | 0.0 | 1.0 |
| DEFMPCGG_5 | 1.0 | 0.0 | 1.0 |
| DEFMPCGG_6 | 1.0 | 0.0 | 1.0 |
| DEFMPCGG_7 | 1.0 | 0.0 | 1.0 |
| DEFMPCGG_8 | 1.0 | 0.0 | 1.0 |
| DEFMPCGG_9 | 1.0 | 0.0 | 1.0 |
| DEFMPCGG_10 | 1.0 | 0.0 | 1.0 |
| DEFMPCGG_11 | 1.0 | 0.0 | 1.0 |
| DEFMPCGG_12 | 1.0 | 0.0 | 1.0 |
| DEFMPCGG_15 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_16 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_17 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_18 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_19 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_20 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_21 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_22 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_23 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_24 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_25 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_26 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_27 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_28 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_29 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_30 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_31 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_32 | 1.0 | 0.0 | 1.0 |
| DEFMPCGG_33 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_34 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_35 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_36 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_37 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_38 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_39 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_40 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_41 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_42 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_43 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_44 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_45 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_46 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_47 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_48 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_49 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_50 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_51 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_52 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_53 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_54 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_55 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_56 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_57 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_58 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_59 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_60 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_61 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_62 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_63 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_64 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_65 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_66 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_67 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_68 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_69 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_70 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_71 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_72 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_73 | 1.0 | 0.0 | 1.0 |
| DEFMPCGG_74 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_75 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_76 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_77 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_78 | 0.0 | 1.0 | 0.0 |
| DEFMPCGG_79 | 1.0 | 0.0 | 1.0 |
| DEFMPCGG_81 | 1.0 | 0.0 | 1.0 |
| DEFMPCGG_82 | 1.0 | 0.0 | 1.0 |
| DEFMPCGG_83 | 1.0 | 0.0 | 1.0 |
| DEFMPCGG_84 | 1.0 | 0.0 | 1.0 |
| DEFMPCGG_85 | 1.0 | 0.0 | 1.0 |
| DEFMPCGG_86 | 1.0 | 0.0 | 1.0 |
| DEFMPCGG_88 | 1.0 | 0.0 | 1.0 |
| DEFMPCGG_89 | 1.0 | 0.0 | 1.0 |
| DEFMPCGG_90 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DEFMPCGG_32 | 6918 | 38997 | False | Myoviridae | VOG4763, VOG4845, VOG4691, VOG4550, VOG0573, VOG1348, VOG1433, VOG1956, VOG4910, VOG5068, VOG4699, VOG1352, VOG1883, VOG1881, VOG1353, VOG4778, VOG1942, VOG2779, VOG1915, VOG4865, VOG4564, VOG1912, VOG10227, VOG10904, VOG4544, VOG0796, VOG6542, VOG0198, VOG6005 |
| DEFMPCGG_32 | 42970 | 44181 | False | Siphoviridae | VOG0181, VOG0010 |
Phigaro v2.4.0 (Database: Jan. 2024 release)