Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NJCBKDEP_27 | 28799 | 29503 | WalR | 2.91e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| NJCBKDEP_69 | 31789 | 31986 | CspR | 1.18e-33 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NJCBKDEP_2 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_3 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_4 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_5 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_10 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_13 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_14 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_16 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_17 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_18 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_19 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_20 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_21 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_22 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_25 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_26 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_27 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_28 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_29 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_30 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_31 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_32 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_33 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_34 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_38 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_39 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_40 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_41 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_42 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_43 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_44 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_45 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_46 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_47 | 1.0 | 0.0 | 1.0 |
| NJCBKDEP_49 | 1.0 | 0.0 | 1.0 |
| NJCBKDEP_51 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_52 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_53 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_54 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_55 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_56 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_57 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_58 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_59 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_60 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_64 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_65 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_66 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_67 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_68 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_69 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_70 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_71 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_72 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_73 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_75 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_76 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_77 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_79 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_80 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_83 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_84 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_86 | 1.0 | 0.0 | 1.0 |
| NJCBKDEP_89 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_90 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_91 | 1.0 | 0.0 | 1.0 |
| NJCBKDEP_92 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_93 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_94 | 1.0 | 0.0 | 1.0 |
| NJCBKDEP_95 | 1.0 | 0.0 | 1.0 |
| NJCBKDEP_96 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_97 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_98 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_99 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_100 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_101 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_102 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_103 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_104 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_105 | 1.0 | 0.0 | 1.0 |
| NJCBKDEP_109 | 1.0 | 0.0 | 1.0 |
| NJCBKDEP_111 | 1.0 | 0.0 | 1.0 |
| NJCBKDEP_114 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_115 | 1.0 | 0.0 | 1.0 |
| NJCBKDEP_116 | 0.0 | 1.0 | 0.0 |
| NJCBKDEP_117 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NJCBKDEP_71 | 3553 | 35990 | False | Siphoviridae | VOG9667, VOG8520, VOG8520, VOG7236, VOG0181, VOG10867, VOG1302, VOG4967, VOG0321, VOG0322, VOG4548, VOG6545, VOG4606, VOG0327, VOG5998, VOG5562, VOG0198, VOG4841, VOG4581, VOG4556, VOG4568, VOG7454, VOG3471, VOG4589, VOG1900, VOG0704, VOG4586, VOG1049, VOG3474, VOG5793, VOG4633, VOG4763, VOG4849, VOG3498, VOG0648, VOG0861, VOG5087, VOG0602, VOG8294 |
| NJCBKDEP_80 | 1722 | 11293 | False | Myoviridae | VOG0152, VOG4567, VOG4693, VOG6623, VOG9860, VOG11003, VOG10904, VOG0226, VOG4566, VOG0685, VOG2215, VOG4965, VOG1333 |
| NJCBKDEP_83 | 204466 | 208413 | False | Siphoviridae | VOG6495, VOG4552, VOG10059, VOG0181, VOG10867 |
Phigaro v2.4.0 (Database: Jan. 2024 release)