Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LOLECCEM_846 | 11442 | 10738 | WalR | 1.12e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| LOLECCEM_830 | 31801 | 31998 | CspR | 9.20e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LOLECCEM_13 | 1.0 | 0.0 | 1.0 |
| LOLECCEM_80 | 1.0 | 0.0 | 1.0 |
| LOLECCEM_82 | 1.0 | 0.0 | 1.0 |
| LOLECCEM_134 | 1.0 | 0.0 | 1.0 |
| LOLECCEM_440 | 1.0 | 0.0 | 1.0 |
| LOLECCEM_610 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_611 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_612 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_613 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_614 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_615 | 1.0 | 0.0 | 1.0 |
| LOLECCEM_616 | 1.0 | 0.0 | 1.0 |
| LOLECCEM_617 | 1.0 | 0.0 | 1.0 |
| LOLECCEM_618 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_619 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_620 | 1.0 | 0.0 | 1.0 |
| LOLECCEM_621 | 1.0 | 0.0 | 1.0 |
| LOLECCEM_622 | 1.0 | 0.0 | 1.0 |
| LOLECCEM_623 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_624 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_625 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_709 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_710 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_711 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_712 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_713 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_714 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_715 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_717 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_738 | 1.0 | 0.0 | 1.0 |
| LOLECCEM_772 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_773 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_774 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_775 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_776 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_777 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_778 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_780 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_781 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_782 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_787 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_788 | 1.0 | 0.0 | 1.0 |
| LOLECCEM_789 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_790 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_807 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_808 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_809 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_811 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_812 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_813 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_814 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_815 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_816 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_817 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_818 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_819 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_820 | 1.0 | 0.0 | 1.0 |
| LOLECCEM_821 | 1.0 | 0.0 | 1.0 |
| LOLECCEM_822 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_823 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_824 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_825 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_826 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_827 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_828 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_829 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_830 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_831 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_832 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_833 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_834 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_835 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_836 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_838 | 1.0 | 0.0 | 1.0 |
| LOLECCEM_841 | 1.0 | 0.0 | 1.0 |
| LOLECCEM_845 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_846 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_847 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_848 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_849 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_854 | 1.0 | 0.0 | 1.0 |
| LOLECCEM_857 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_858 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_859 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_861 | 1.0 | 0.0 | 1.0 |
| LOLECCEM_862 | 1.0 | 0.0 | 1.0 |
| LOLECCEM_864 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_865 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_866 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_867 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_868 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_869 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_870 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_871 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_872 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_874 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_875 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_876 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_877 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_879 | 1.0 | 0.0 | 1.0 |
| LOLECCEM_882 | 1.0 | 0.0 | 1.0 |
| LOLECCEM_884 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_886 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_887 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_888 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_889 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_890 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_891 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_892 | 1.0 | 0.0 | 1.0 |
| LOLECCEM_893 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_894 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_895 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_896 | 0.0 | 1.0 | 0.0 |
| LOLECCEM_899 | 1.0 | 0.0 | 1.0 |
| LOLECCEM_900 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LOLECCEM_713 | 3295 | 8381 | False | Siphoviridae | VOG4799, VOG3642, VOG10867, VOG0181, VOG10059, VOG4552 |
| LOLECCEM_833 | 3549 | 35986 | False | Siphoviridae | VOG9667, VOG8520, VOG8520, VOG7236, VOG0181, VOG10867, VOG1302, VOG4967, VOG0321, VOG0322, VOG4548, VOG6545, VOG4606, VOG0327, VOG5998, VOG5562, VOG0198, VOG4841, VOG4581, VOG4556, VOG4568, VOG7454, VOG3471, VOG4589, VOG1900, VOG0704, VOG4586, VOG1049, VOG3474, VOG5793, VOG4633, VOG4763, VOG4849, VOG3498, VOG0648, VOG0861, VOG5087, VOG0602, VOG8294 |
| LOLECCEM_894 | 111371 | 120942 | False | Myoviridae | VOG0807, VOG1333, VOG4965, VOG2215, VOG0685, VOG4566, VOG0226, VOG10904, VOG11003, VOG9860, VOG6623, VOG4693, VOG4567 |
Phigaro v2.4.0 (Database: Jan. 2024 release)