Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MFLLNFHI_66 | 339543 | 338839 | WalR | 8.07e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| MFLLNFHI_34 | 17536 | 17733 | CspR | 1.59e-32 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MFLLNFHI_1 | 0.0 | 1.0 | 0.0 |
| MFLLNFHI_5 | 0.0 | 1.0 | 0.0 |
| MFLLNFHI_10 | 1.0 | 0.0 | 1.0 |
| MFLLNFHI_11 | 0.0 | 1.0 | 0.0 |
| MFLLNFHI_13 | 0.0 | 1.0 | 0.0 |
| MFLLNFHI_17 | 0.0 | 1.0 | 0.0 |
| MFLLNFHI_18 | 1.0 | 0.0 | 1.0 |
| MFLLNFHI_19 | 0.0 | 1.0 | 0.0 |
| MFLLNFHI_23 | 0.0 | 1.0 | 0.0 |
| MFLLNFHI_24 | 0.0 | 1.0 | 0.0 |
| MFLLNFHI_25 | 0.0 | 1.0 | 0.0 |
| MFLLNFHI_26 | 0.0 | 1.0 | 0.0 |
| MFLLNFHI_27 | 1.0 | 0.0 | 1.0 |
| MFLLNFHI_28 | 1.0 | 0.0 | 1.0 |
| MFLLNFHI_29 | 0.0 | 1.0 | 0.0 |
| MFLLNFHI_32 | 1.0 | 0.0 | 1.0 |
| MFLLNFHI_33 | 1.0 | 0.0 | 1.0 |
| MFLLNFHI_34 | 0.0 | 1.0 | 0.0 |
| MFLLNFHI_36 | 0.0 | 1.0 | 0.0 |
| MFLLNFHI_42 | 0.0 | 1.0 | 0.0 |
| MFLLNFHI_45 | 0.0 | 1.0 | 0.0 |
| MFLLNFHI_47 | 0.0 | 1.0 | 0.0 |
| MFLLNFHI_51 | 0.0 | 1.0 | 0.0 |
| MFLLNFHI_52 | 1.0 | 0.0 | 1.0 |
| MFLLNFHI_54 | 1.0 | 0.0 | 1.0 |
| MFLLNFHI_55 | 0.0 | 1.0 | 0.0 |
| MFLLNFHI_56 | 1.0 | 0.0 | 1.0 |
| MFLLNFHI_57 | 0.0 | 1.0 | 0.0 |
| MFLLNFHI_61 | 1.0 | 0.0 | 1.0 |
| MFLLNFHI_62 | 0.0 | 1.0 | 0.0 |
| MFLLNFHI_63 | 0.0 | 1.0 | 0.0 |
| MFLLNFHI_66 | 0.0 | 1.0 | 0.0 |
| MFLLNFHI_68 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MFLLNFHI_11 | 11512 | 20389 | False | Siphoviridae | VOG6142, VOG4694, VOG11003, VOG1638, VOG6238, VOG4566, VOG1292, VOG0083, VOG0083, VOG0650 |
Phigaro v2.4.0 (Database: Jan. 2024 release)