Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PPHCJNEB_46 | 76183 | 75986 | CspA | 5.57e-28 | cold shock protein | 80.30 | 100.00 | CAA62903 |
| PPHCJNEB_46 | 76183 | 75989 | CspR | 2.42e-27 | cold shock protein | 81.54 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PPHCJNEB_1 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_2 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_3 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_4 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_5 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_6 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_7 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_8 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_9 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_10 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_11 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_12 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_13 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_14 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_15 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_16 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_17 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_18 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_19 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_20 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_21 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_22 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_23 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_24 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_25 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_26 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_27 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_28 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_29 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_30 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_31 | 1.0 | 0.0 | 1.0 |
| PPHCJNEB_32 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_33 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_34 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_35 | 1.0 | 0.0 | 1.0 |
| PPHCJNEB_36 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_37 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_38 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_39 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_40 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_41 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_42 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_43 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_44 | 1.0 | 0.0 | 1.0 |
| PPHCJNEB_45 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_46 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_47 | 1.0 | 0.0 | 1.0 |
| PPHCJNEB_48 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_49 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_50 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_51 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_52 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_53 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_54 | 0.0 | 1.0 | 0.0 |
| PPHCJNEB_55 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PPHCJNEB_50 | 24909 | 49858 | False | Siphoviridae | VOG4552, VOG1436, VOG1302, VOG2228, VOG1309, VOG0186, VOG0226, VOG4566, VOG0189, VOG0536, VOG0198, VOG3477, VOG0249, VOG0796, VOG10227, VOG0720, VOG4564, VOG1300, VOG10914, VOG1319, VOG4713, VOG5660, VOG0724, VOG0799, VOG0725, VOG4545, VOG0727 |
Phigaro v2.4.0 (Database: Jan. 2024 release)