Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GFHAJFDC_16 | 427396 | 427767 | Mycobacterium tuberculosis rpsL mutations conferring resistance to Streptomycin | ARO:3003395 | Mtub_rpsL_STR | 82.93 | 99.19 | NC_000962.3 |
| GFHAJFDC_16 | 292894 | 294813 | tet(W) | ARO:3000194 | tet(W) | 97.81 | 100.00 | AJ222769.3 |
| GFHAJFDC_3 | 68087 | 71770 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 91.30 | 103.46 | NC_008618.1 |
| GFHAJFDC_1 | 19831 | 23157 | Bifidobacterium bifidum ileS conferring resistance to mupirocin | ARO:3003730 | Bbif_ileS_MUP | 99.55 | 100.09 | CP001840.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GFHAJFDC_16 | 292894 | 294813 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.38 | 100.00 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GFHAJFDC_16 | 292894 | 294810 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.37 | 100.00 | WP_000691721.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GFHAJFDC_1 | 0.0 | 1.0 | 0.0 |
| GFHAJFDC_2 | 0.0 | 1.0 | 0.0 |
| GFHAJFDC_3 | 0.0 | 1.0 | 0.0 |
| GFHAJFDC_4 | 0.0 | 1.0 | 0.0 |
| GFHAJFDC_5 | 0.0 | 1.0 | 0.0 |
| GFHAJFDC_6 | 1.0 | 0.0 | 1.0 |
| GFHAJFDC_7 | 0.0 | 1.0 | 0.0 |
| GFHAJFDC_8 | 0.0 | 1.0 | 0.0 |
| GFHAJFDC_9 | 0.0 | 1.0 | 0.0 |
| GFHAJFDC_10 | 0.0 | 1.0 | 0.0 |
| GFHAJFDC_11 | 0.0 | 1.0 | 0.0 |
| GFHAJFDC_12 | 0.0 | 1.0 | 0.0 |
| GFHAJFDC_13 | 0.0 | 1.0 | 0.0 |
| GFHAJFDC_14 | 0.0 | 1.0 | 0.0 |
| GFHAJFDC_15 | 0.0 | 1.0 | 0.0 |
| GFHAJFDC_16 | 0.0 | 1.0 | 0.0 |
| GFHAJFDC_17 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GFHAJFDC_14 | 101260 | 107479 | False | Siphoviridae | VOG2842, VOG4571, VOG0275, VOG4602 |
| GFHAJFDC_16 | 264553 | 272191 | False | Siphoviridae | VOG5395, VOG4602, VOG0010, VOG3304, VOG0585, VOG11075 |
| GFHAJFDC_16 | 356837 | 383843 | False | Myoviridae | VOG0189, VOG0677, VOG0085, VOG2484, VOG0384, VOG4548, VOG11016, VOG5689, VOG0382, VOG0052, VOG8190, VOG2090 |
Phigaro v2.4.0 (Database: Jan. 2024 release)