Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KAJBOHKI_28 | 73595 | 73966 | Mycobacterium tuberculosis rpsL mutations conferring resistance to Streptomycin | ARO:3003395 | Mtub_rpsL_STR | 82.93 | 99.19 | NC_000962.3 |
| KAJBOHKI_16 | 53855 | 57487 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 91.30 | 102.02 | NC_008618.1 |
| KAJBOHKI_2 | 390 | 3716 | Bifidobacterium bifidum ileS conferring resistance to mupirocin | ARO:3003730 | Bbif_ileS_MUP | 99.73 | 100.09 | CP001840.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KAJBOHKI_1 | 0.0 | 1.0 | 0.0 |
| KAJBOHKI_2 | 0.0 | 1.0 | 0.0 |
| KAJBOHKI_3 | 0.0 | 1.0 | 0.0 |
| KAJBOHKI_4 | 0.0 | 1.0 | 0.0 |
| KAJBOHKI_5 | 0.0 | 1.0 | 0.0 |
| KAJBOHKI_6 | 0.0 | 1.0 | 0.0 |
| KAJBOHKI_7 | 0.0 | 1.0 | 0.0 |
| KAJBOHKI_8 | 0.0 | 1.0 | 0.0 |
| KAJBOHKI_9 | 0.0 | 1.0 | 0.0 |
| KAJBOHKI_10 | 1.0 | 0.0 | 1.0 |
| KAJBOHKI_11 | 0.0 | 1.0 | 0.0 |
| KAJBOHKI_12 | 1.0 | 0.0 | 1.0 |
| KAJBOHKI_13 | 0.0 | 1.0 | 0.0 |
| KAJBOHKI_14 | 0.0 | 1.0 | 0.0 |
| KAJBOHKI_15 | 0.0 | 1.0 | 0.0 |
| KAJBOHKI_16 | 0.0 | 1.0 | 0.0 |
| KAJBOHKI_17 | 0.0 | 1.0 | 0.0 |
| KAJBOHKI_18 | 0.0 | 1.0 | 0.0 |
| KAJBOHKI_19 | 0.0 | 1.0 | 0.0 |
| KAJBOHKI_20 | 0.0 | 1.0 | 0.0 |
| KAJBOHKI_21 | 0.0 | 1.0 | 0.0 |
| KAJBOHKI_22 | 0.0 | 1.0 | 0.0 |
| KAJBOHKI_23 | 0.0 | 1.0 | 0.0 |
| KAJBOHKI_24 | 0.0 | 1.0 | 0.0 |
| KAJBOHKI_25 | 0.0 | 1.0 | 0.0 |
| KAJBOHKI_26 | 0.0 | 1.0 | 0.0 |
| KAJBOHKI_27 | 1.0 | 0.0 | 1.0 |
| KAJBOHKI_28 | 0.0 | 1.0 | 0.0 |
| KAJBOHKI_29 | 0.0 | 1.0 | 0.0 |
| KAJBOHKI_30 | 1.0 | 0.0 | 1.0 |
| KAJBOHKI_31 | 1.0 | 0.0 | 1.0 |
| KAJBOHKI_32 | 0.0 | 1.0 | 0.0 |
| KAJBOHKI_33 | 0.0 | 1.0 | 0.0 |
| KAJBOHKI_34 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KAJBOHKI_14 | 2822 | 6988 | True | Myoviridae | VOG5088, VOG5088, VOG2438 |
| KAJBOHKI_24 | 24347 | 42673 | False | Siphoviridae | VOG0943, VOG2538, VOG2038, VOG9852, VOG2560, VOG5101, VOG0720, VOG4576, VOG4553, VOG0880, VOG1581, VOG5601, VOG5793 |
| KAJBOHKI_26 | 85006 | 92688 | False | Siphoviridae | VOG5395, VOG4602, VOG0010, VOG3304, VOG0585, VOG11075 |
| KAJBOHKI_28 | 6893 | 29613 | False | Myoviridae | VOG0085, VOG2484, VOG0384, VOG4548, VOG11016, VOG5689, VOG0382, VOG0052, VOG8190, VOG2090 |
Phigaro v2.4.0 (Database: Jan. 2024 release)