Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 6 | 6.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KNODJHCK_1 | 1232088 | 1233266 | tufA | 0.0 | elongation factor Tu | 85.75 | 99.49 | AHM69299 |
| KNODJHCK_1 | 884428 | 882923 | atpA | 0.0 | ATP synthase subunit alpha | 80.08 | 100.00 | ABD31377 |
| KNODJHCK_1 | 1178090 | 1178959 | pdxS | 3.54e-150 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| KNODJHCK_1 | 2525456 | 2526232 | CodY | 6.34e-127 | nutrient-responsive regulator | 81.85 | 100.00 | ACJ80679 |
| KNODJHCK_1 | 2525456 | 2526232 | codY | 3.05e-123 | global regulator and isoleucine sensor | 80.69 | 100.00 | ASW39076 |
| KNODJHCK_1 | 2116411 | 2115842 | ClpP | 1.58e-102 | part of proteolytic complex | 83.68 | 97.44 | BAB94595 |
| KNODJHCK_1 | 1065393 | 1064707 | WalR | 4.66e-102 | transcriptional regulatory protein | 80.79 | 97.44 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KNODJHCK_1 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KNODJHCK_1 | 1288982 | 1320443 | False | Siphoviridae | VOG4602, VOG9667, VOG9667, VOG4552, VOG8241, VOG3549, VOG1878, VOG4600, VOG1309, VOG4855, VOG9600, VOG0025, VOG9996, VOG0397, VOG0536, VOG0195, VOG6440, VOG1298, VOG8445, VOG0198, VOG0611, VOG7407, VOG7708, VOG4568, VOG3210, VOG4711, VOG1581, VOG3888, VOG5660, VOG4557, VOG6163, VOG0801, VOG4619, VOG6373, VOG4660 |
| KNODJHCK_1 | 2919725 | 2960790 | False | Siphoviridae | VOG4662, VOG4918, VOG0136, VOG0753, VOG8580, VOG6243, VOG8438, VOG3462, VOG0801, VOG6163, VOG5852, VOG4586, VOG0704, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG4581, VOG0275, VOG0198, VOG4552, VOG0226, VOG8647, VOG4690, VOG1878, VOG0181, VOG6495, VOG11075, VOG9667, VOG9858, VOG0982, VOG4548, VOG4602, VOG0275, VOG6778 |
Phigaro v2.4.0 (Database: Jan. 2024 release)