Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PHMGJBEE_9 | 10692 | 10495 | CspR | 8.77e-29 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| PHMGJBEE_9 | 10692 | 10495 | CspA | 1.63e-28 | cold shock protein | 80.30 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PHMGJBEE_1 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_2 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_3 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_4 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_5 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_7 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_8 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_9 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_10 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_11 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_12 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_13 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_14 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_15 | 1.0 | 0.0 | 1.0 |
| PHMGJBEE_16 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_17 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_18 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_19 | 1.0 | 0.0 | 1.0 |
| PHMGJBEE_20 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_21 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_22 | 1.0 | 0.0 | 1.0 |
| PHMGJBEE_23 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_24 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_25 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_26 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_27 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_28 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_29 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_30 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_31 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_32 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_33 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_34 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_35 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_36 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_37 | 1.0 | 0.0 | 1.0 |
| PHMGJBEE_38 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_39 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_40 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_41 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_42 | 1.0 | 0.0 | 1.0 |
| PHMGJBEE_43 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_44 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_45 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_46 | 1.0 | 0.0 | 1.0 |
| PHMGJBEE_47 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_48 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_49 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_50 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_51 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_52 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_53 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_54 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_55 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_56 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_57 | 1.0 | 0.0 | 1.0 |
| PHMGJBEE_58 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_60 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_61 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_62 | 1.0 | 0.0 | 1.0 |
| PHMGJBEE_63 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_64 | 1.0 | 0.0 | 1.0 |
| PHMGJBEE_65 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_66 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_67 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_68 | 1.0 | 0.0 | 1.0 |
| PHMGJBEE_69 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_70 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_71 | 0.0 | 1.0 | 0.0 |
| PHMGJBEE_72 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PHMGJBEE_4 | 25603 | 44779 | False | Myoviridae | VOG0189, VOG5235, VOG0083, VOG0382, VOG0384, VOG0205, VOG0226, VOG6085, VOG0025, VOG8295 |
| PHMGJBEE_20 | 9037 | 17416 | False | Siphoviridae | VOG3478, VOG0275, VOG4677, VOG1159, VOG4585, VOG0275 |
| PHMGJBEE_37 | 8663 | 18934 | False | Siphoviridae | VOG0819, VOG0862, VOG9667, VOG3622, VOG0650, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609 |
Phigaro v2.4.0 (Database: Jan. 2024 release)