Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NIHMAEPK_69 | 45587 | 44883 | WalR | 4.08e-112 | transcriptional regulatory protein | 82.98 | 100.00 | EPH95667 |
| NIHMAEPK_79 | 18783 | 18980 | CspR | 3.71e-33 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NIHMAEPK_2 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_3 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_4 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_5 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_6 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_7 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_8 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_9 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_10 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_11 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_12 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_13 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_14 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_15 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_16 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_17 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_18 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_19 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_20 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_21 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_22 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_23 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_24 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_25 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_26 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_27 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_28 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_29 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_30 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_31 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_32 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_33 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_35 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_36 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_37 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_38 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_40 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_41 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_42 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_43 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_44 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_45 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_46 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_47 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_48 | 1.0 | 0.0 | 1.0 |
| NIHMAEPK_49 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_50 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_52 | 1.0 | 0.0 | 1.0 |
| NIHMAEPK_53 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_54 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_55 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_56 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_57 | 1.0 | 0.0 | 1.0 |
| NIHMAEPK_58 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_59 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_60 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_61 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_62 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_63 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_64 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_65 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_66 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_67 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_69 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_70 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_72 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_73 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_74 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_75 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_76 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_77 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_78 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_79 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_80 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_81 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_82 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_83 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_84 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_85 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_86 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_87 | 1.0 | 0.0 | 1.0 |
| NIHMAEPK_88 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_89 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_90 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_91 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_92 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_93 | 1.0 | 0.0 | 1.0 |
| NIHMAEPK_94 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_95 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_96 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_97 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_98 | 1.0 | 0.0 | 1.0 |
| NIHMAEPK_99 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_100 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_101 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_102 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_103 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_104 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_105 | 1.0 | 0.0 | 1.0 |
| NIHMAEPK_106 | 1.0 | 0.0 | 1.0 |
| NIHMAEPK_107 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_108 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_109 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_110 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_111 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_112 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_113 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_114 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_115 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_116 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_119 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_121 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_123 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_125 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_126 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_127 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_129 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_130 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_131 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_132 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_134 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_135 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_137 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_138 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_139 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_143 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_147 | 0.0 | 1.0 | 0.0 |
| NIHMAEPK_148 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NIHMAEPK_11 | 32537 | 43785 | False | Siphoviridae | VOG4589, VOG0204, VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG4609, VOG4632, VOG1581 |
| NIHMAEPK_79 | 41759 | 68954 | False | Siphoviridae | VOG11003, VOG9860, VOG6623, VOG4693, VOG9741, VOG0152, VOG3643, VOG6414, VOG0198, VOG7136, VOG4570, VOG4549, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG0694, VOG1322, VOG4713, VOG1320, VOG9583, VOG1321, VOG0799, VOG0725, VOG1323, VOG0801, VOG4619, VOG4683, VOG0861 |
| NIHMAEPK_106 | 39956 | 50239 | False | Siphoviridae | VOG0204, VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG0205, VOG4606, VOG4632, VOG1581 |
| NIHMAEPK_148 | 4371 | 41803 | False | Siphoviridae | VOG0638, VOG0703, VOG1637, VOG4705, VOG4599, VOG4605, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG5601, VOG4553, VOG4568, VOG4556, VOG3644, VOG4544, VOG4581, VOG4841, VOG4549, VOG10904, VOG4570, VOG1315, VOG0198, VOG3307, VOG2820, VOG4567, VOG6238, VOG4693, VOG7735, VOG0025, VOG4799, VOG0226, VOG0514, VOG0283, VOG0685, VOG3642, VOG4967, VOG10867, VOG0181, VOG4552, VOG5353, VOG8520 |
Phigaro v2.4.0 (Database: Jan. 2024 release)