Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GPLDCMJG_11 | 22673 | 23575 | cepA | ARO:3003559 | cepA | 100.00 | 100.00 | U05883.1 |
| GPLDCMJG_125 | 17102 | 18067 | CfxA3 | ARO:3003003 | CfxA3 | 99.69 | 100.00 | AF472622.2 |
| GPLDCMJG_131 | 289 | 2214 | tet(Q) | ARO:3000191 | tet(Q) | 97.50 | 97.56 | Z21523.1 |
| GPLDCMJG_139 | 147 | 2072 | tet(Q) | ARO:3000191 | tet(Q) | 97.50 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GPLDCMJG_11 | 22673 | 23575 | cepA | Unknown Beta-lactam | 100.00 | 100.00 | L13472 |
| GPLDCMJG_125 | 17102 | 18067 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| GPLDCMJG_131 | 289 | 2214 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 98.13 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GPLDCMJG_11 | 22676 | 23575 | cepA | CepA family extended-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005795628.1 |
| GPLDCMJG_125 | 17105 | 18067 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | BLASTX | 99.69 | 100.00 | WP_004348227.1 |
| GPLDCMJG_131 | 292 | 2214 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 97.82 | 100.00 | WP_063856407.1 |
| GPLDCMJG_139 | 147 | 2069 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 97.50 | 100.00 | WP_002560998.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GPLDCMJG_1 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_2 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_3 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_4 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_5 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_6 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_10 | 1.0 | 0.0 | 1.0 |
| GPLDCMJG_11 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_12 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_13 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_14 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_15 | 1.0 | 0.0 | 1.0 |
| GPLDCMJG_17 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_18 | 1.0 | 0.0 | 1.0 |
| GPLDCMJG_19 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_21 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_22 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_23 | 1.0 | 0.0 | 1.0 |
| GPLDCMJG_24 | 1.0 | 0.0 | 1.0 |
| GPLDCMJG_27 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_29 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_30 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_32 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_33 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_37 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_40 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_41 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_42 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_43 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_45 | 1.0 | 0.0 | 1.0 |
| GPLDCMJG_46 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_47 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_48 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_50 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_51 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_52 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_53 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_54 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_55 | 1.0 | 0.0 | 1.0 |
| GPLDCMJG_56 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_57 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_58 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_59 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_60 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_61 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_62 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_63 | 1.0 | 0.0 | 1.0 |
| GPLDCMJG_64 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_65 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_66 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_67 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_68 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_69 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_70 | 1.0 | 0.0 | 1.0 |
| GPLDCMJG_71 | 1.0 | 0.0 | 1.0 |
| GPLDCMJG_72 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_73 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_74 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_77 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_79 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_80 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_81 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_82 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_83 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_84 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_85 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_86 | 1.0 | 0.0 | 1.0 |
| GPLDCMJG_87 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_88 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_89 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_90 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_91 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_92 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_93 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_94 | 1.0 | 0.0 | 1.0 |
| GPLDCMJG_95 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_96 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_97 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_98 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_99 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_100 | 1.0 | 0.0 | 1.0 |
| GPLDCMJG_101 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_102 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_103 | 1.0 | 0.0 | 1.0 |
| GPLDCMJG_104 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_105 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_106 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_107 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_108 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_109 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_112 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_113 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_114 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_116 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_118 | 1.0 | 0.0 | 1.0 |
| GPLDCMJG_119 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_120 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_121 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_123 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_124 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_125 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_126 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_127 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_128 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_129 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_130 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_131 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_132 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_133 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_134 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_135 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_137 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_138 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_139 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_140 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_141 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_142 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_143 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_144 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_145 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_146 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_147 | 1.0 | 0.0 | 1.0 |
| GPLDCMJG_148 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_149 | 0.0 | 1.0 | 0.0 |
| GPLDCMJG_150 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)