Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 1 | 0 | 4.12 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| COEODNAD_344 | 3637 | 4437 | ErmF | ARO:3000498 | ErmF | 99.62 | 100.00 | M17124.1 |
| COEODNAD_344 | 2288 | 3424 | tet(X) | ARO:3000205 | tet(X) | 99.74 | 97.42 | M37699.1 |
| COEODNAD_111 | 312 | 1214 | cepA | ARO:3003559 | cepA | 99.67 | 100.00 | U05883.1 |
| COEODNAD_51 | 3 | 1586 | tet(Q) | ARO:3000191 | tet(Q) | 98.11 | 80.37 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| COEODNAD_344 | 3637 | 4437 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| COEODNAD_344 | 2258 | 3424 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.91 | 100.00 | M37699 |
| COEODNAD_111 | 312 | 1214 | cepA | Unknown Beta-lactam | 99.67 | 100.00 | FR688022 |
| COEODNAD_51 | 1 | 1583 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 98.42 | 82.19 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| COEODNAD_111 | 312 | 1211 | cepA | CepA family extended-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005816369.1 |
| COEODNAD_344 | 3640 | 4437 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| COEODNAD_344 | 2258 | 3421 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| COEODNAD_51 | 3 | 1583 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIAL_CONTIG_ENDX | 98.29 | 82.22 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| COEODNAD_201 | 1298 | 2491 | bft-1 | 0.0 | BFT B. fragilis toxin, subtype 1 | Exotoxin | 100.00 | 100.00 | BAA77276 |
| COEODNAD_201 | 1298 | 2491 | bft-2 | 0.0 | BFT B. fragilis toxin, subtype 2 | Exotoxin | 94.89 | 100.00 | BAA77277 |
| COEODNAD_201 | 1298 | 2491 | bft-3 | 0.0 | BFT B. fragilis toxin, subtype 3 | Exotoxin | 94.47 | 100.00 | BAA77275 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| COEODNAD_1 | 1.0 | 0.0 | 1.0 |
| COEODNAD_3 | 0.0 | 1.0 | 0.0 |
| COEODNAD_7 | 0.0 | 1.0 | 0.0 |
| COEODNAD_8 | 0.0 | 1.0 | 0.0 |
| COEODNAD_9 | 0.0 | 1.0 | 0.0 |
| COEODNAD_10 | 0.0 | 1.0 | 0.0 |
| COEODNAD_12 | 0.0 | 1.0 | 0.0 |
| COEODNAD_13 | 0.0 | 1.0 | 0.0 |
| COEODNAD_14 | 0.0 | 1.0 | 0.0 |
| COEODNAD_15 | 1.0 | 0.0 | 1.0 |
| COEODNAD_16 | 1.0 | 0.0 | 1.0 |
| COEODNAD_19 | 0.0 | 1.0 | 0.0 |
| COEODNAD_20 | 0.0 | 1.0 | 0.0 |
| COEODNAD_21 | 1.0 | 0.0 | 1.0 |
| COEODNAD_22 | 1.0 | 0.0 | 1.0 |
| COEODNAD_25 | 1.0 | 0.0 | 1.0 |
| COEODNAD_27 | 0.0 | 1.0 | 0.0 |
| COEODNAD_28 | 0.0 | 1.0 | 0.0 |
| COEODNAD_29 | 0.0 | 1.0 | 0.0 |
| COEODNAD_32 | 1.0 | 0.0 | 1.0 |
| COEODNAD_38 | 0.0 | 1.0 | 0.0 |
| COEODNAD_40 | 1.0 | 0.0 | 1.0 |
| COEODNAD_42 | 0.0 | 1.0 | 0.0 |
| COEODNAD_43 | 1.0 | 0.0 | 1.0 |
| COEODNAD_46 | 0.0 | 1.0 | 0.0 |
| COEODNAD_47 | 0.0 | 1.0 | 0.0 |
| COEODNAD_50 | 1.0 | 0.0 | 1.0 |
| COEODNAD_51 | 1.0 | 0.0 | 1.0 |
| COEODNAD_52 | 0.0 | 1.0 | 0.0 |
| COEODNAD_55 | 0.0 | 1.0 | 0.0 |
| COEODNAD_57 | 0.0 | 1.0 | 0.0 |
| COEODNAD_58 | 1.0 | 0.0 | 1.0 |
| COEODNAD_61 | 0.0 | 1.0 | 0.0 |
| COEODNAD_62 | 0.0 | 1.0 | 0.0 |
| COEODNAD_63 | 0.0 | 1.0 | 0.0 |
| COEODNAD_64 | 1.0 | 0.0 | 1.0 |
| COEODNAD_66 | 0.0 | 1.0 | 0.0 |
| COEODNAD_67 | 0.0 | 1.0 | 0.0 |
| COEODNAD_68 | 0.0 | 1.0 | 0.0 |
| COEODNAD_70 | 0.0 | 1.0 | 0.0 |
| COEODNAD_71 | 0.0 | 1.0 | 0.0 |
| COEODNAD_72 | 0.0 | 1.0 | 0.0 |
| COEODNAD_74 | 0.0 | 1.0 | 0.0 |
| COEODNAD_75 | 0.0 | 1.0 | 0.0 |
| COEODNAD_76 | 0.0 | 1.0 | 0.0 |
| COEODNAD_77 | 1.0 | 0.0 | 1.0 |
| COEODNAD_78 | 0.0 | 1.0 | 0.0 |
| COEODNAD_79 | 0.0 | 1.0 | 0.0 |
| COEODNAD_81 | 0.0 | 1.0 | 0.0 |
| COEODNAD_82 | 1.0 | 0.0 | 1.0 |
| COEODNAD_83 | 1.0 | 0.0 | 1.0 |
| COEODNAD_84 | 0.0 | 1.0 | 0.0 |
| COEODNAD_86 | 1.0 | 0.0 | 1.0 |
| COEODNAD_87 | 0.0 | 1.0 | 0.0 |
| COEODNAD_88 | 0.0 | 1.0 | 0.0 |
| COEODNAD_89 | 0.0 | 1.0 | 0.0 |
| COEODNAD_90 | 0.0 | 1.0 | 0.0 |
| COEODNAD_92 | 0.0 | 1.0 | 0.0 |
| COEODNAD_93 | 0.0 | 1.0 | 0.0 |
| COEODNAD_94 | 0.0 | 1.0 | 0.0 |
| COEODNAD_99 | 0.0 | 1.0 | 0.0 |
| COEODNAD_100 | 0.0 | 1.0 | 0.0 |
| COEODNAD_101 | 0.0 | 1.0 | 0.0 |
| COEODNAD_102 | 0.0 | 1.0 | 0.0 |
| COEODNAD_103 | 1.0 | 0.0 | 1.0 |
| COEODNAD_104 | 1.0 | 0.0 | 1.0 |
| COEODNAD_105 | 0.0 | 1.0 | 0.0 |
| COEODNAD_106 | 0.0 | 1.0 | 0.0 |
| COEODNAD_109 | 0.0 | 1.0 | 0.0 |
| COEODNAD_111 | 0.0 | 1.0 | 0.0 |
| COEODNAD_112 | 0.0 | 1.0 | 0.0 |
| COEODNAD_113 | 0.0 | 1.0 | 0.0 |
| COEODNAD_118 | 1.0 | 0.0 | 1.0 |
| COEODNAD_119 | 1.0 | 0.0 | 1.0 |
| COEODNAD_121 | 0.0 | 1.0 | 0.0 |
| COEODNAD_122 | 0.0 | 1.0 | 0.0 |
| COEODNAD_123 | 1.0 | 0.0 | 1.0 |
| COEODNAD_124 | 0.0 | 1.0 | 0.0 |
| COEODNAD_125 | 0.0 | 1.0 | 0.0 |
| COEODNAD_126 | 0.0 | 1.0 | 0.0 |
| COEODNAD_127 | 0.0 | 1.0 | 0.0 |
| COEODNAD_128 | 0.0 | 1.0 | 0.0 |
| COEODNAD_129 | 0.0 | 1.0 | 0.0 |
| COEODNAD_131 | 0.0 | 1.0 | 0.0 |
| COEODNAD_133 | 1.0 | 0.0 | 1.0 |
| COEODNAD_137 | 1.0 | 0.0 | 1.0 |
| COEODNAD_139 | 0.0 | 1.0 | 0.0 |
| COEODNAD_140 | 0.0 | 1.0 | 0.0 |
| COEODNAD_141 | 0.0 | 1.0 | 0.0 |
| COEODNAD_143 | 0.0 | 1.0 | 0.0 |
| COEODNAD_144 | 0.0 | 1.0 | 0.0 |
| COEODNAD_145 | 0.0 | 1.0 | 0.0 |
| COEODNAD_147 | 0.0 | 1.0 | 0.0 |
| COEODNAD_148 | 0.0 | 1.0 | 0.0 |
| COEODNAD_149 | 0.0 | 1.0 | 0.0 |
| COEODNAD_150 | 0.0 | 1.0 | 0.0 |
| COEODNAD_151 | 0.0 | 1.0 | 0.0 |
| COEODNAD_154 | 0.0 | 1.0 | 0.0 |
| COEODNAD_155 | 0.0 | 1.0 | 0.0 |
| COEODNAD_157 | 0.0 | 1.0 | 0.0 |
| COEODNAD_164 | 0.0 | 1.0 | 0.0 |
| COEODNAD_166 | 1.0 | 0.0 | 1.0 |
| COEODNAD_167 | 1.0 | 0.0 | 1.0 |
| COEODNAD_168 | 0.0 | 1.0 | 0.0 |
| COEODNAD_169 | 0.0 | 1.0 | 0.0 |
| COEODNAD_170 | 1.0 | 0.0 | 1.0 |
| COEODNAD_171 | 0.0 | 1.0 | 0.0 |
| COEODNAD_172 | 0.0 | 1.0 | 0.0 |
| COEODNAD_173 | 1.0 | 0.0 | 1.0 |
| COEODNAD_174 | 0.0 | 1.0 | 0.0 |
| COEODNAD_177 | 0.0 | 1.0 | 0.0 |
| COEODNAD_178 | 0.0 | 1.0 | 0.0 |
| COEODNAD_179 | 0.0 | 1.0 | 0.0 |
| COEODNAD_180 | 1.0 | 0.0 | 1.0 |
| COEODNAD_181 | 0.0 | 1.0 | 0.0 |
| COEODNAD_182 | 1.0 | 0.0 | 1.0 |
| COEODNAD_183 | 0.0 | 1.0 | 0.0 |
| COEODNAD_186 | 0.0 | 1.0 | 0.0 |
| COEODNAD_188 | 0.0 | 1.0 | 0.0 |
| COEODNAD_190 | 0.0 | 1.0 | 0.0 |
| COEODNAD_191 | 0.0 | 1.0 | 0.0 |
| COEODNAD_193 | 0.0 | 1.0 | 0.0 |
| COEODNAD_195 | 1.0 | 0.0 | 1.0 |
| COEODNAD_196 | 1.0 | 0.0 | 1.0 |
| COEODNAD_197 | 0.0 | 1.0 | 0.0 |
| COEODNAD_198 | 0.0 | 1.0 | 0.0 |
| COEODNAD_199 | 0.0 | 1.0 | 0.0 |
| COEODNAD_201 | 1.0 | 0.0 | 1.0 |
| COEODNAD_202 | 1.0 | 0.0 | 1.0 |
| COEODNAD_203 | 0.0 | 1.0 | 0.0 |
| COEODNAD_204 | 0.0 | 1.0 | 0.0 |
| COEODNAD_205 | 1.0 | 0.0 | 1.0 |
| COEODNAD_206 | 0.0 | 1.0 | 0.0 |
| COEODNAD_207 | 1.0 | 0.0 | 1.0 |
| COEODNAD_210 | 0.0 | 1.0 | 0.0 |
| COEODNAD_213 | 1.0 | 0.0 | 1.0 |
| COEODNAD_214 | 0.0 | 1.0 | 0.0 |
| COEODNAD_216 | 0.0 | 1.0 | 0.0 |
| COEODNAD_217 | 1.0 | 0.0 | 1.0 |
| COEODNAD_218 | 1.0 | 0.0 | 1.0 |
| COEODNAD_219 | 1.0 | 0.0 | 1.0 |
| COEODNAD_220 | 1.0 | 0.0 | 1.0 |
| COEODNAD_221 | 0.0 | 1.0 | 0.0 |
| COEODNAD_223 | 0.0 | 1.0 | 0.0 |
| COEODNAD_224 | 0.0 | 1.0 | 0.0 |
| COEODNAD_225 | 0.0 | 1.0 | 0.0 |
| COEODNAD_226 | 0.0 | 1.0 | 0.0 |
| COEODNAD_227 | 0.0 | 1.0 | 0.0 |
| COEODNAD_228 | 0.0 | 1.0 | 0.0 |
| COEODNAD_229 | 0.0 | 1.0 | 0.0 |
| COEODNAD_230 | 0.0 | 1.0 | 0.0 |
| COEODNAD_231 | 1.0 | 0.0 | 1.0 |
| COEODNAD_232 | 0.0 | 1.0 | 0.0 |
| COEODNAD_233 | 1.0 | 0.0 | 1.0 |
| COEODNAD_235 | 0.0 | 1.0 | 0.0 |
| COEODNAD_236 | 0.0 | 1.0 | 0.0 |
| COEODNAD_238 | 0.0 | 1.0 | 0.0 |
| COEODNAD_239 | 0.0 | 1.0 | 0.0 |
| COEODNAD_240 | 0.0 | 1.0 | 0.0 |
| COEODNAD_244 | 0.0 | 1.0 | 0.0 |
| COEODNAD_245 | 0.0 | 1.0 | 0.0 |
| COEODNAD_246 | 1.0 | 0.0 | 1.0 |
| COEODNAD_247 | 0.0 | 1.0 | 0.0 |
| COEODNAD_248 | 0.0 | 1.0 | 0.0 |
| COEODNAD_249 | 1.0 | 0.0 | 1.0 |
| COEODNAD_250 | 0.0 | 1.0 | 0.0 |
| COEODNAD_251 | 0.0 | 1.0 | 0.0 |
| COEODNAD_254 | 0.0 | 1.0 | 0.0 |
| COEODNAD_255 | 0.0 | 1.0 | 0.0 |
| COEODNAD_256 | 0.0 | 1.0 | 0.0 |
| COEODNAD_257 | 1.0 | 0.0 | 1.0 |
| COEODNAD_258 | 0.0 | 1.0 | 0.0 |
| COEODNAD_259 | 0.0 | 1.0 | 0.0 |
| COEODNAD_260 | 0.0 | 1.0 | 0.0 |
| COEODNAD_261 | 0.0 | 1.0 | 0.0 |
| COEODNAD_263 | 1.0 | 0.0 | 1.0 |
| COEODNAD_264 | 0.0 | 1.0 | 0.0 |
| COEODNAD_265 | 0.0 | 1.0 | 0.0 |
| COEODNAD_266 | 1.0 | 0.0 | 1.0 |
| COEODNAD_267 | 1.0 | 0.0 | 1.0 |
| COEODNAD_268 | 0.0 | 1.0 | 0.0 |
| COEODNAD_269 | 0.0 | 1.0 | 0.0 |
| COEODNAD_271 | 0.0 | 1.0 | 0.0 |
| COEODNAD_273 | 0.0 | 1.0 | 0.0 |
| COEODNAD_274 | 0.0 | 1.0 | 0.0 |
| COEODNAD_275 | 0.0 | 1.0 | 0.0 |
| COEODNAD_276 | 0.0 | 1.0 | 0.0 |
| COEODNAD_277 | 1.0 | 0.0 | 1.0 |
| COEODNAD_279 | 0.0 | 1.0 | 0.0 |
| COEODNAD_280 | 0.0 | 1.0 | 0.0 |
| COEODNAD_281 | 0.0 | 1.0 | 0.0 |
| COEODNAD_282 | 0.0 | 1.0 | 0.0 |
| COEODNAD_284 | 0.0 | 1.0 | 0.0 |
| COEODNAD_286 | 1.0 | 0.0 | 1.0 |
| COEODNAD_287 | 0.0 | 1.0 | 0.0 |
| COEODNAD_288 | 0.0 | 1.0 | 0.0 |
| COEODNAD_289 | 0.0 | 1.0 | 0.0 |
| COEODNAD_290 | 1.0 | 0.0 | 1.0 |
| COEODNAD_291 | 0.0 | 1.0 | 0.0 |
| COEODNAD_292 | 1.0 | 0.0 | 1.0 |
| COEODNAD_296 | 0.0 | 1.0 | 0.0 |
| COEODNAD_297 | 1.0 | 0.0 | 1.0 |
| COEODNAD_298 | 0.0 | 1.0 | 0.0 |
| COEODNAD_299 | 0.0 | 1.0 | 0.0 |
| COEODNAD_301 | 0.0 | 1.0 | 0.0 |
| COEODNAD_302 | 1.0 | 0.0 | 1.0 |
| COEODNAD_303 | 0.0 | 1.0 | 0.0 |
| COEODNAD_305 | 1.0 | 0.0 | 1.0 |
| COEODNAD_306 | 0.0 | 1.0 | 0.0 |
| COEODNAD_308 | 1.0 | 0.0 | 1.0 |
| COEODNAD_310 | 0.0 | 1.0 | 0.0 |
| COEODNAD_311 | 0.0 | 1.0 | 0.0 |
| COEODNAD_313 | 0.0 | 1.0 | 0.0 |
| COEODNAD_315 | 0.0 | 1.0 | 0.0 |
| COEODNAD_317 | 1.0 | 0.0 | 1.0 |
| COEODNAD_319 | 0.0 | 1.0 | 0.0 |
| COEODNAD_320 | 0.0 | 1.0 | 0.0 |
| COEODNAD_323 | 0.0 | 1.0 | 0.0 |
| COEODNAD_325 | 0.0 | 1.0 | 0.0 |
| COEODNAD_326 | 1.0 | 0.0 | 1.0 |
| COEODNAD_328 | 1.0 | 0.0 | 1.0 |
| COEODNAD_330 | 0.0 | 1.0 | 0.0 |
| COEODNAD_331 | 0.0 | 1.0 | 0.0 |
| COEODNAD_332 | 1.0 | 0.0 | 1.0 |
| COEODNAD_333 | 0.0 | 1.0 | 0.0 |
| COEODNAD_334 | 0.0 | 1.0 | 0.0 |
| COEODNAD_335 | 0.0 | 1.0 | 0.0 |
| COEODNAD_336 | 1.0 | 0.0 | 1.0 |
| COEODNAD_337 | 0.0 | 1.0 | 0.0 |
| COEODNAD_338 | 0.0 | 1.0 | 0.0 |
| COEODNAD_339 | 0.0 | 1.0 | 0.0 |
| COEODNAD_341 | 0.0 | 1.0 | 0.0 |
| COEODNAD_342 | 1.0 | 0.0 | 1.0 |
| COEODNAD_343 | 1.0 | 0.0 | 1.0 |
| COEODNAD_344 | 0.0 | 1.0 | 0.0 |
| COEODNAD_347 | 1.0 | 0.0 | 1.0 |
| COEODNAD_348 | 1.0 | 0.0 | 1.0 |
| COEODNAD_349 | 0.0 | 1.0 | 0.0 |
| COEODNAD_350 | 0.0 | 1.0 | 0.0 |
| COEODNAD_352 | 0.0 | 1.0 | 0.0 |
| COEODNAD_353 | 0.0 | 1.0 | 0.0 |
| COEODNAD_356 | 0.0 | 1.0 | 0.0 |
| COEODNAD_357 | 0.0 | 1.0 | 0.0 |
| COEODNAD_358 | 0.0 | 1.0 | 0.0 |
| COEODNAD_359 | 0.0 | 1.0 | 0.0 |
| COEODNAD_360 | 0.0 | 1.0 | 0.0 |
| COEODNAD_361 | 0.0 | 1.0 | 0.0 |
| COEODNAD_363 | 0.0 | 1.0 | 0.0 |
| COEODNAD_365 | 1.0 | 0.0 | 1.0 |
| COEODNAD_366 | 0.0 | 1.0 | 0.0 |
| COEODNAD_368 | 0.0 | 1.0 | 0.0 |
| COEODNAD_369 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)