Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MGDFONKE_1 | 2670665 | 2669961 | WalR | 2.03e-111 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| MGDFONKE_5 | 22986 | 24047 | repUS74 | 1062 / 1062 | 99.62 | CP000424 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MGDFONKE_1 | 0.0 | 1.0 | 0.0 |
| MGDFONKE_2 | 1.0 | 0.0 | 1.0 |
| MGDFONKE_3 | 1.0 | 0.0 | 1.0 |
| MGDFONKE_4 | 1.0 | 0.0 | 1.0 |
| MGDFONKE_5 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MGDFONKE_1 | 471807 | 481596 | False | Siphoviridae | VOG0862, VOG8520, VOG4552, VOG6834, VOG0513, VOG0181, VOG10867, VOG3642, VOG4799, VOG0025, VOG7735, VOG4693, VOG0195, VOG0152, VOG3643, VOG3643, VOG7441 |
| MGDFONKE_1 | 486982 | 509856 | False | Siphoviridae | VOG5886, VOG4841, VOG4581, VOG1886, VOG7540, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG4705, VOG0861, VOG7017, VOG0703 |
| MGDFONKE_1 | 961868 | 971659 | False | Siphoviridae | VOG1581, VOG4632, VOG4606, VOG0205, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568 |
| MGDFONKE_1 | 1760978 | 1802805 | False | Siphoviridae | VOG3795, VOG4918, VOG0703, VOG1637, VOG7896, VOG4599, VOG4605, VOG6163, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG10303, VOG4553, VOG4568, VOG4556, VOG3644, VOG4544, VOG4581, VOG4841, VOG6947, VOG4549, VOG4570, VOG5088, VOG1315, VOG0198, VOG1563, VOG0044, VOG7441, VOG0102, VOG3643, VOG3643, VOG0152, VOG4237, VOG0195, VOG9741, VOG4693, VOG7735, VOG0025, VOG4799, VOG3642, VOG10867, VOG0181, VOG4552, VOG3622, VOG9667 |
| MGDFONKE_1 | 2194782 | 2240860 | False | Siphoviridae | VOG1246, VOG6083, VOG9373, VOG4918, VOG0703, VOG7017, VOG0861, VOG4599, VOG4605, VOG6163, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1322, VOG1887, VOG3434, VOG4555, VOG1183, VOG1300, VOG5616, VOG4564, VOG0720, VOG4544, VOG0796, VOG1345, VOG4549, VOG4570, VOG0198, VOG1298, VOG3643, VOG0152, VOG4237, VOG9741, VOG4693, VOG6623, VOG0189, VOG4855, VOG0186, VOG1309, VOG2338, VOG3049, VOG6495, VOG9667, VOG4602, VOG9312 |
Phigaro v2.4.0 (Database: Jan. 2024 release)