Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 11 | 10 | 8 | 16.88 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JBIJPFBC_10 | 132036 | 132890 | aadK | ARO:3002627 | aadK | 97.89 | 100.00 | AL009126.1 |
| JBIJPFBC_22 | 83698 | 84867 | bmr | ARO:3003007 | bmr | 99.74 | 100.00 | M33768.1 |
| JBIJPFBC_51 | 46553 | 47146 | tmrB | ARO:3003059 | tmrB | 98.48 | 100.00 | AL009126.3 |
| JBIJPFBC_27 | 42393 | 43313 | mphK | ARO:3004541 | mphK | 99.02 | 100.00 | CP010314.1 |
| JBIJPFBC_25 | 40067 | 40384 | ykkD | ARO:3003064 | ykkD | 99.05 | 100.00 | AL009126.1 |
| JBIJPFBC_25 | 39729 | 40067 | ykkC | ARO:3003063 | ykkC | 100.00 | 100.00 | AL009126.1 |
| JBIJPFBC_14 | 31842 | 33488 | vmlR | ARO:3004476 | vmlR | 99.27 | 100.18 | NC_000964.3 |
| JBIJPFBC_27 | 29060 | 30499 | lmrB | ARO:3002813 | lmrB | 99.37 | 100.42 | JYFL01000006.1 |
| JBIJPFBC_53 | 514 | 3084 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.77 | 100.00 | AL009126.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JBIJPFBC_27 | 42393 | 43313 | mph(K) | Spiramycin, Telithromycin | 99.24 | 100.00 | NC_000964 |
| JBIJPFBC_10 | 132036 | 132890 | aadK | Streptomycin | 98.48 | 100.00 | M26879 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JBIJPFBC_14 | 31842 | 33485 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 99.27 | 100.00 | WP_003234144.1 |
| JBIJPFBC_27 | 42396 | 43313 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 99.02 | 100.00 | WP_003246254.1 |
| JBIJPFBC_10 | 132036 | 132887 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 97.89 | 100.00 | WP_003229862.1 |
| JBIJPFBC_39 | 21137 | 21655 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 93.64 | 100.00 | WP_003242546.1 |
| JBIJPFBC_95 | 1415 | 4012 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 81.06 | 100.00 | WP_087347987.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| JBIJPFBC_2 | 183294 | 184475 | capB | 0.0 | Capsule | Immune modulation | 99.75 | 100.00 | NP_391471 |
| JBIJPFBC_35 | 42220 | 42861 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.69 | 100.00 | NP_390062 |
| JBIJPFBC_30 | 43002 | 44198 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.42 | 100.00 | NP_391079 |
| JBIJPFBC_30 | 42191 | 42976 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.36 | 100.00 | NP_391080 |
| JBIJPFBC_41 | 8491 | 10254 | dep/capD | 0.0 | Capsule | Immune modulation | 99.09 | 100.00 | NP_389723 |
| JBIJPFBC_2 | 181669 | 182811 | capA | 0.0 | Capsule | Immune modulation | 98.95 | 100.00 | NP_391469 |
| JBIJPFBC_30 | 46832 | 53968 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.70 | 100.00 | NP_391076 |
| JBIJPFBC_2 | 182830 | 183279 | capC | 0.0 | Capsule | Immune modulation | 98.67 | 100.00 | NP_391470 |
| JBIJPFBC_30 | 45874 | 46812 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.62 | 100.00 | NP_391077 |
| JBIJPFBC_30 | 44227 | 45846 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.41 | 100.00 | NP_391078 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JBIJPFBC_12 | 31708 | 32844 | tufA | 0.0 | elongation factor Tu | 84.96 | 95.69 | AHM69299 |
| JBIJPFBC_68 | 4334 | 5203 | pdxS | 4.72e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| JBIJPFBC_23 | 15619 | 14843 | CodY | 7.59e-126 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| JBIJPFBC_2 | 26746 | 27315 | ClpP | 2.10e-99 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
| JBIJPFBC_20 | 37350 | 36958 | spxA1 | 4.46e-71 | redox-responsive transcription factor | 83.97 | 100.00 | AAF21893 |
| JBIJPFBC_20 | 37350 | 36958 | spx | 2.66e-69 | essential gene which is a thiol/oxidative stress sensor | 80.15 | 100.00 | BAB57159 |
| JBIJPFBC_38 | 14384 | 14142 | SpoVG | 4.74e-39 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| JBIJPFBC_45 | 365 | 168 | CspA | 1.29e-32 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| JBIJPFBC_35 | 30989 | 30795 | CspD | 1.54e-28 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| JBIJPFBC_35 | 30989 | 30792 | CspB | 3.19e-28 | cold shock protein | 80.30 | 100.00 | CAD00094 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JBIJPFBC_1 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_2 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_3 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_4 | 1.0 | 0.0 | 1.0 |
| JBIJPFBC_5 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_6 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_7 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_8 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_9 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_10 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_11 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_12 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_13 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_14 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_16 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_17 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_18 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_19 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_20 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_21 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_22 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_23 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_24 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_25 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_26 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_27 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_28 | 1.0 | 0.0 | 1.0 |
| JBIJPFBC_29 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_30 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_31 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_32 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_33 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_34 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_35 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_36 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_37 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_38 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_39 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_40 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_41 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_42 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_43 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_45 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_46 | 1.0 | 0.0 | 1.0 |
| JBIJPFBC_47 | 1.0 | 0.0 | 1.0 |
| JBIJPFBC_48 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_50 | 1.0 | 0.0 | 1.0 |
| JBIJPFBC_51 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_53 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_54 | 1.0 | 0.0 | 1.0 |
| JBIJPFBC_55 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_56 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_57 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_58 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_59 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_60 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_62 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_63 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_64 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_65 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_66 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_67 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_68 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_69 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_71 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_72 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_73 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_74 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_79 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_81 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_82 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_83 | 1.0 | 0.0 | 1.0 |
| JBIJPFBC_84 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_85 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_87 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_88 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_91 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_92 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_93 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_94 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_95 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_98 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_99 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_100 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_101 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_102 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_103 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_104 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_106 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_109 | 0.0 | 1.0 | 0.0 |
| JBIJPFBC_112 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JBIJPFBC_5 | 46785 | 57113 | False | Siphoviridae | VOG4602, VOG9667, VOG3490, VOG0189, VOG4861, VOG5447, VOG0796, VOG10227, VOG4773, VOG4685, VOG0749 |
| JBIJPFBC_25 | 3415 | 10490 | False | Myoviridae | VOG4865, VOG4885, VOG3894, VOG4550, VOG4691, VOG4862, VOG7718, VOG3390, VOG7895, VOG0753 |
Phigaro v2.4.0 (Database: Jan. 2024 release)