Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 1 | 7 | 7.14 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KODCOHLO_6 | 100429 | 101805 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 86.56 | 100.00 | X08034 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KODCOHLO_6 | 100435 | 101805 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.43 | 99.78 | WP_003242953.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| KODCOHLO_33 | 133280 | 134461 | capB | 0.0 | Capsule | Immune modulation | 82.38 | 99.66 | NP_391471 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KODCOHLO_8 | 31668 | 32804 | tufA | 0.0 | elongation factor Tu | 86.54 | 95.69 | AHM69299 |
| KODCOHLO_143 | 4339 | 5208 | pdxS | 4.47e-153 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| KODCOHLO_29 | 119442 | 120218 | CodY | 1.87e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| KODCOHLO_13 | 35958 | 35566 | spxA1 | 2.66e-70 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| KODCOHLO_49 | 16013 | 16210 | CspA | 2.56e-32 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| KODCOHLO_47 | 27656 | 27850 | CspD | 8.06e-29 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| KODCOHLO_47 | 27656 | 27853 | CspB | 1.67e-28 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| KODCOHLO_49 | 16013 | 16207 | CspR | 3.35e-27 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| KODCOHLO_9 | 137291 | 136419 | lipA (SAUSA300_0829) | 8.73e-163 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KODCOHLO_1 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_4 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_6 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_7 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_8 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_9 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_11 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_12 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_13 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_14 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_16 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_17 | 1.0 | 0.0 | 1.0 |
| KODCOHLO_18 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_19 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_21 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_22 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_23 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_24 | 1.0 | 0.0 | 1.0 |
| KODCOHLO_25 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_26 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_27 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_28 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_29 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_30 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_31 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_32 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_33 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_35 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_37 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_38 | 1.0 | 0.0 | 1.0 |
| KODCOHLO_40 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_41 | 1.0 | 0.0 | 1.0 |
| KODCOHLO_42 | 1.0 | 0.0 | 1.0 |
| KODCOHLO_43 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_44 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_47 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_48 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_49 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_50 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_52 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_53 | 1.0 | 0.0 | 1.0 |
| KODCOHLO_55 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_56 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_57 | 1.0 | 0.0 | 1.0 |
| KODCOHLO_58 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_59 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_60 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_62 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_64 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_66 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_69 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_74 | 1.0 | 0.0 | 1.0 |
| KODCOHLO_76 | 1.0 | 0.0 | 1.0 |
| KODCOHLO_77 | 1.0 | 0.0 | 1.0 |
| KODCOHLO_79 | 1.0 | 0.0 | 1.0 |
| KODCOHLO_81 | 1.0 | 0.0 | 1.0 |
| KODCOHLO_83 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_84 | 1.0 | 0.0 | 1.0 |
| KODCOHLO_85 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_86 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_89 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_91 | 1.0 | 0.0 | 1.0 |
| KODCOHLO_92 | 1.0 | 0.0 | 1.0 |
| KODCOHLO_93 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_94 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_95 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_100 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_101 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_102 | 1.0 | 0.0 | 1.0 |
| KODCOHLO_103 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_104 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_105 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_106 | 1.0 | 0.0 | 1.0 |
| KODCOHLO_107 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_109 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_110 | 1.0 | 0.0 | 1.0 |
| KODCOHLO_113 | 1.0 | 0.0 | 1.0 |
| KODCOHLO_114 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_117 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_118 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_119 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_120 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_121 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_125 | 1.0 | 0.0 | 1.0 |
| KODCOHLO_129 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_130 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_131 | 1.0 | 0.0 | 1.0 |
| KODCOHLO_132 | 1.0 | 0.0 | 1.0 |
| KODCOHLO_138 | 1.0 | 0.0 | 1.0 |
| KODCOHLO_141 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_143 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_149 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_151 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_153 | 1.0 | 0.0 | 1.0 |
| KODCOHLO_160 | 0.0 | 1.0 | 0.0 |
| KODCOHLO_166 | 1.0 | 0.0 | 1.0 |
| KODCOHLO_167 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KODCOHLO_44 | 1537 | 20882 | False | Siphoviridae | VOG0519, VOG4544, VOG4556, VOG4573, VOG4553, VOG3435, VOG0204, VOG4589, VOG0704, VOG0539, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG4660, VOG4612, VOG3390 |
| KODCOHLO_50 | 45644 | 55519 | False | Siphoviridae | VOG9667, VOG0189, VOG4861, VOG5447, VOG0796, VOG10227, VOG4773, VOG4685, VOG0749 |
| KODCOHLO_55 | 135 | 23351 | False | Myoviridae | VOG4550, VOG3894, VOG4885, VOG4865, VOG6163, VOG3892, VOG3891, VOG3890, VOG10055, VOG4870, VOG4589, VOG1581, VOG0749, VOG4685, VOG4688, VOG4773, VOG4544, VOG5532, VOG9656, VOG1328, VOG1327 |
| KODCOHLO_55 | 33388 | 35259 | False | Unknown | VOG1292, VOG1309 |
| KODCOHLO_59 | 359 | 22601 | False | Myoviridae | VOG0753, VOG4705, VOG3390, VOG7718, VOG4845, VOG4691, VOG4550, VOG0573, VOG1348, VOG1433, VOG1956, VOG6163, VOG4699, VOG1352, VOG1883, VOG1881, VOG1353, VOG4623, VOG4564, VOG1643, VOG4572, VOG4555, VOG0045, VOG1183, VOG0720, VOG10439, VOG0796 |
| KODCOHLO_66 | 1876 | 22993 | False | Siphoviridae | VOG4841, VOG0713, VOG4581, VOG1886, VOG3607, VOG4556, VOG4568, VOG4553, VOG5361, VOG0204, VOG1266, VOG0539, VOG0704, VOG4586, VOG0541, VOG5910, VOG0801, VOG4772, VOG4660, VOG4612, VOG3390, VOG7896 |
Phigaro v2.4.0 (Database: Jan. 2024 release)