Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JBCGNJMK_1 | 1850393 | 1851097 | WalR | 8.81e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JBCGNJMK_11 | 3 | 785 | repUS64 | 784 / 954 | 92.73 | JN601038 |
| JBCGNJMK_4 | 43100 | 44236 | rep32 | 1156 / 1161 | 81.31 | AL592102 |
| JBCGNJMK_7 | 1700 | 2634 | rep28 | 941 / 930 | 81.08 | CP003162 |
| JBCGNJMK_5 | 11138 | 12100 | repUS73 | 977 / 1101 | 80.14 | CP002654 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JBCGNJMK_1 | 0.0 | 1.0 | 0.0 |
| JBCGNJMK_2 | 1.0 | 0.0 | 1.0 |
| JBCGNJMK_3 | 1.0 | 0.0 | 1.0 |
| JBCGNJMK_4 | 1.0 | 0.0 | 1.0 |
| JBCGNJMK_5 | 1.0 | 0.0 | 1.0 |
| JBCGNJMK_6 | 1.0 | 0.0 | 1.0 |
| JBCGNJMK_7 | 1.0 | 0.0 | 1.0 |
| JBCGNJMK_8 | 1.0 | 0.0 | 1.0 |
| JBCGNJMK_9 | 1.0 | 0.0 | 1.0 |
| JBCGNJMK_10 | 1.0 | 0.0 | 1.0 |
| JBCGNJMK_11 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JBCGNJMK_1 | 847170 | 875099 | True | Siphoviridae | VOG5088, VOG9667, VOG2485, VOG5088, VOG0054, VOG1637, VOG4705, VOG6243, VOG3462, VOG0801, VOG6163, VOG0725, VOG0799, VOG0724, VOG9583, VOG4713, VOG1329, VOG10914, VOG4564, VOG0720, VOG10227, VOG0796, VOG0045, VOG0198, VOG3643 |
| JBCGNJMK_1 | 894203 | 904849 | False | Siphoviridae | VOG0204, VOG4553, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG6414, VOG4609, VOG4632, VOG6294 |
| JBCGNJMK_1 | 2963858 | 2996250 | False | Siphoviridae | VOG4566, VOG0189, VOG11024, VOG4813, VOG6140, VOG4567, VOG0044, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG10957, VOG9998 |
| JBCGNJMK_4 | 8853 | 13839 | False | Unknown | VOG0275, VOG7059, VOG10940, VOG0321 |
Phigaro v2.4.0 (Database: Jan. 2024 release)