Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GDFGGEML_13 | 393956 | 394660 | WalR | 8.79e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GDFGGEML_7 | 31292 | 32389 | repUS73 | 1101 / 1101 | 93.91 | CP002654 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GDFGGEML_1 | 1.0 | 0.0 | 1.0 |
| GDFGGEML_3 | 1.0 | 0.0 | 1.0 |
| GDFGGEML_4 | 1.0 | 0.0 | 1.0 |
| GDFGGEML_5 | 1.0 | 0.0 | 1.0 |
| GDFGGEML_6 | 1.0 | 0.0 | 1.0 |
| GDFGGEML_7 | 1.0 | 0.0 | 1.0 |
| GDFGGEML_8 | 1.0 | 0.0 | 1.0 |
| GDFGGEML_9 | 0.0 | 1.0 | 0.0 |
| GDFGGEML_10 | 0.0 | 1.0 | 0.0 |
| GDFGGEML_11 | 0.0 | 1.0 | 0.0 |
| GDFGGEML_12 | 0.0 | 1.0 | 0.0 |
| GDFGGEML_13 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GDFGGEML_10 | 153992 | 188112 | False | Siphoviridae | VOG1637, VOG8294, VOG3498, VOG10608, VOG1335, VOG4545, VOG1334, VOG1333, VOG4634, VOG0704, VOG1330, VOG4713, VOG1887, VOG3434, VOG10914, VOG4564, VOG7038, VOG0720, VOG4544, VOG0796, VOG0198, VOG4693, VOG4566, VOG0186, VOG1309, VOG7298, VOG0181, VOG6495 |
| GDFGGEML_13 | 384978 | 389418 | False | Unknown | VOG4841, VOG4581, VOG4544 |
| GDFGGEML_13 | 927782 | 955969 | False | Siphoviridae | VOG1297, VOG6970, VOG0044, VOG9671, VOG0198, VOG1315, VOG1183, VOG3699, VOG4544, VOG0691, VOG0692, VOG4555, VOG4572, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG4910, VOG0801, VOG4619, VOG3463, VOG1637, VOG4626, VOG4334, VOG7896, VOG1637, VOG0602, VOG8294, VOG1637, VOG0054 |
| GDFGGEML_13 | 1316995 | 1342256 | False | Siphoviridae | VOG3480, VOG4567, VOG0044, VOG0044, VOG3643, VOG1049, VOG0198, VOG1714, VOG1183, VOG0638, VOG0796, VOG10227, VOG0720, VOG4564, VOG10914, VOG1329, VOG4713, VOG9583, VOG0724, VOG0799, VOG0725, VOG6163, VOG0801, VOG3462, VOG4626, VOG4334 |
| GDFGGEML_13 | 1436539 | 1463804 | False | Siphoviridae | VOG0322, VOG0514, VOG4799, VOG0189, VOG6005, VOG10015, VOG1551, VOG5883, VOG0044, VOG0044, VOG3643, VOG0198, VOG1315, VOG4841, VOG10904, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG4605 |
Phigaro v2.4.0 (Database: Jan. 2024 release)