Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OJBFPGHG_5 | 51668 | 51471 | CspA | 1.37e-29 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| OJBFPGHG_5 | 51668 | 51474 | CspR | 2.48e-28 | cold shock protein | 84.61 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OJBFPGHG_1 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_2 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_3 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_4 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_5 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_6 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_7 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_8 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_9 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_10 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_11 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_12 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_13 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_14 | 1.0 | 0.0 | 1.0 |
| OJBFPGHG_15 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_16 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_17 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_18 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_19 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_20 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_21 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_22 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_23 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_24 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_25 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_26 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_27 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_28 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_29 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_30 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_31 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_32 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_33 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_34 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_35 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_36 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_37 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_38 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_39 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_40 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_41 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_42 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_43 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_44 | 1.0 | 0.0 | 1.0 |
| OJBFPGHG_45 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_46 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_47 | 1.0 | 0.0 | 1.0 |
| OJBFPGHG_48 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_49 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_50 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_52 | 1.0 | 0.0 | 1.0 |
| OJBFPGHG_53 | 1.0 | 0.0 | 1.0 |
| OJBFPGHG_54 | 1.0 | 0.0 | 1.0 |
| OJBFPGHG_55 | 1.0 | 0.0 | 1.0 |
| OJBFPGHG_56 | 1.0 | 0.0 | 1.0 |
| OJBFPGHG_57 | 1.0 | 0.0 | 1.0 |
| OJBFPGHG_58 | 1.0 | 0.0 | 1.0 |
| OJBFPGHG_59 | 1.0 | 0.0 | 1.0 |
| OJBFPGHG_61 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_62 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_63 | 1.0 | 0.0 | 1.0 |
| OJBFPGHG_64 | 1.0 | 0.0 | 1.0 |
| OJBFPGHG_65 | 0.0 | 1.0 | 0.0 |
| OJBFPGHG_66 | 1.0 | 0.0 | 1.0 |
| OJBFPGHG_67 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OJBFPGHG_1 | 77743 | 97571 | False | Myoviridae | VOG0189, VOG5235, VOG0083, VOG0382, VOG0384, VOG0205, VOG0226, VOG6085, VOG0025, VOG8295 |
| OJBFPGHG_2 | 53737 | 55345 | False | Unknown | VOG4687, VOG11074 |
| OJBFPGHG_14 | 8551 | 46402 | False | Siphoviridae | VOG0275, VOG3304, VOG2215, VOG4995, VOG3711, VOG2228, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG8685, VOG4559, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207, VOG4586, VOG0209, VOG4545, VOG0801, VOG4760, VOG10972, VOG7133, VOG9997, VOG4856, VOG10223, VOG8917, VOG1637, VOG0703 |
Phigaro v2.4.0 (Database: Jan. 2024 release)