Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PBMPDJDH_17 | 64064 | 64768 | WalR | 4.08e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| PBMPDJDH_1 | 183472 | 183278 | CspR | 1.38e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| PBMPDJDH_1 | 183472 | 183275 | CspA | 2.12e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PBMPDJDH_22 | 28459 | 29365 | rep38 | 909 / 903 | 95.60 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PBMPDJDH_1 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_2 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_3 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_4 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_5 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_6 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_7 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_8 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_9 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_10 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_11 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_12 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_13 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_14 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_15 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_16 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_17 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_18 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_19 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_20 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_21 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_22 | 1.0 | 0.0 | 1.0 |
| PBMPDJDH_23 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_24 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_25 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_26 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_27 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_28 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_29 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_30 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_31 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_32 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_33 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_34 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_35 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_36 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_37 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_38 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_39 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_40 | 1.0 | 0.0 | 1.0 |
| PBMPDJDH_41 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_42 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_43 | 1.0 | 0.0 | 1.0 |
| PBMPDJDH_44 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_45 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_46 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_47 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_48 | 1.0 | 0.0 | 1.0 |
| PBMPDJDH_49 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_50 | 1.0 | 0.0 | 1.0 |
| PBMPDJDH_51 | 1.0 | 0.0 | 1.0 |
| PBMPDJDH_52 | 1.0 | 0.0 | 1.0 |
| PBMPDJDH_53 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_54 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_55 | 1.0 | 0.0 | 1.0 |
| PBMPDJDH_56 | 1.0 | 0.0 | 1.0 |
| PBMPDJDH_57 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_58 | 1.0 | 0.0 | 1.0 |
| PBMPDJDH_59 | 1.0 | 0.0 | 1.0 |
| PBMPDJDH_60 | 1.0 | 0.0 | 1.0 |
| PBMPDJDH_61 | 0.0 | 1.0 | 0.0 |
| PBMPDJDH_63 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PBMPDJDH_4 | 149840 | 158424 | False | Siphoviridae | VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG0205 |
| PBMPDJDH_11 | 33103 | 56737 | False | Siphoviridae | VOG0796, VOG0691, VOG0692, VOG4555, VOG1329, VOG0695, VOG0696, VOG0697, VOG0698, VOG8134, VOG0701, VOG4605, VOG4599, VOG10957, VOG8870 |
| PBMPDJDH_21 | 13085 | 38417 | False | Siphoviridae | VOG0634, VOG9671, VOG0198, VOG4841, VOG0468, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG4545, VOG4605, VOG4599, VOG10957, VOG10957, VOG8870 |
Phigaro v2.4.0 (Database: Jan. 2024 release)