Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CBFFGENH_7 | 30836 | 32755 | tet(O) | ARO:3000190 | tet(O) | 97.50 | 100.00 | M18896.2 |
| CBFFGENH_7 | 29475 | 30695 | tet(40) | ARO:3000567 | tet(40) | 97.29 | 100.00 | AM419751.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CBFFGENH_7 | 29475 | 30695 | tet(40) | Doxycycline, Tetracycline | 99.34 | 100.00 | FJ158002 |
| CBFFGENH_7 | 30836 | 32755 | tet(O) | Doxycycline, Tetracycline, Minocycline | 99.27 | 100.00 | Y07780 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CBFFGENH_7 | 30839 | 32755 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | BLASTX | 99.06 | 100.00 | WP_014636291.1 |
| CBFFGENH_7 | 29478 | 30695 | tet(40) | tetracycline efflux MFS transporter Tet(40) | BLASTX | 98.52 | 100.00 | WP_009247026.1 |
| CBFFGENH_45 | 6077 | 6277 | vanU-G | glycopeptide resistance transcriptional regulator VanU-G | PARTIALX | 80.60 | 89.33 | WP_021418929.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CBFFGENH_1 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_2 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_3 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_4 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_5 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_6 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_7 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_8 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_9 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_10 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_11 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_12 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_13 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_14 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_15 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_16 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_17 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_18 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_19 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_20 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_21 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_22 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_23 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_24 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_25 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_26 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_27 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_28 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_29 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_30 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_31 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_32 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_33 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_34 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_35 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_36 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_37 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_38 | 1.0 | 0.0 | 1.0 |
| CBFFGENH_39 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_40 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_41 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_42 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_43 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_44 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_45 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_46 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_47 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_48 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_49 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_50 | 1.0 | 0.0 | 1.0 |
| CBFFGENH_51 | 1.0 | 0.0 | 1.0 |
| CBFFGENH_52 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_53 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_54 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_55 | 1.0 | 0.0 | 1.0 |
| CBFFGENH_56 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_57 | 0.0 | 1.0 | 0.0 |
| CBFFGENH_58 | 1.0 | 0.0 | 1.0 |
| CBFFGENH_59 | 1.0 | 0.0 | 1.0 |
| CBFFGENH_60 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CBFFGENH_8 | 26673 | 52654 | False | Myoviridae | VOG4959, |
Phigaro v2.4.0 (Database: Jan. 2024 release)