Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DNAGHGMD_2 | 599788 | 600282 | dfrF | ARO:3002867 | dfrF | 100.00 | 100.00 | AF028812.1 |
| DNAGHGMD_5 | 5207 | 8767 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 98.48 | 100.00 | NC_008618.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DNAGHGMD_2 | 599791 | 600282 | dfrF | trimethoprim-resistant dihydrofolate reductase DfrF | EXACTX | 100.00 | 100.00 | WP_002322211.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DNAGHGMD_1 | 0.0 | 1.0 | 0.0 |
| DNAGHGMD_2 | 0.0 | 1.0 | 0.0 |
| DNAGHGMD_3 | 0.0 | 1.0 | 0.0 |
| DNAGHGMD_4 | 0.0 | 1.0 | 0.0 |
| DNAGHGMD_5 | 0.0 | 1.0 | 0.0 |
| DNAGHGMD_6 | 0.0 | 1.0 | 0.0 |
| DNAGHGMD_7 | 0.0 | 1.0 | 0.0 |
| DNAGHGMD_8 | 0.0 | 1.0 | 0.0 |
| DNAGHGMD_9 | 1.0 | 0.0 | 1.0 |
| DNAGHGMD_10 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DNAGHGMD_1 | 992195 | 1012149 | False | Siphoviridae | VOG0686, VOG2038, VOG3028, VOG4544, VOG0720, VOG4555, VOG4553, VOG1581, VOG4589, VOG1154, VOG4557, VOG4545, VOG3653, VOG5361, VOG5361, VOG5361 |
| DNAGHGMD_1 | 1082676 | 1093250 | False | Siphoviridae | VOG2038, VOG2023, VOG1574, VOG5101, VOG0720, VOG2894, VOG4555, VOG4572, VOG1210, VOG5387 |
| DNAGHGMD_3 | 124733 | 137392 | False | Siphoviridae | VOG4841, VOG4544, VOG4556, VOG4568, VOG5587, VOG5589, VOG5588, VOG5793, VOG9569 |
| DNAGHGMD_4 | 55555 | 74686 | False | Siphoviridae | VOG1159, VOG1158, VOG1210, VOG6197, VOG4553, VOG4568, VOG4556, VOG4544, VOG0296, VOG2038, VOG2902, VOG9438, VOG5067, VOG5733, VOG4693, VOG0226, VOG1309, VOG4600, VOG2124, VOG7246, VOG4552 |
Phigaro v2.4.0 (Database: Jan. 2024 release)