Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IKGLIOCC_25 | 53635 | 55041 | tet(O) | ARO:3000190 | tet(O) | 92.09 | 73.24 | M18896.2 |
| IKGLIOCC_25 | 52418 | 53614 | tet(O) | ARO:3000190 | tet(O) | 90.84 | 62.28 | M18896.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IKGLIOCC_25 | 52418 | 53595 | tet(O/32/O) | Doxycycline, Tetracycline, Minocycline | 99.7453310696095 | 61.35 | FP929050 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IKGLIOCC_25 | 53608 | 55038 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | PARTIALX | 92.66 | 74.65 | WP_012669445.1 |
| IKGLIOCC_25 | 52418 | 53611 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | PARTIALX | 90.45 | 62.28 | WP_012669445.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IKGLIOCC_1 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_2 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_3 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_4 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_5 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_6 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_7 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_8 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_9 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_10 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_11 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_12 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_13 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_14 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_15 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_16 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_17 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_18 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_19 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_20 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_21 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_22 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_23 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_24 | 1.0 | 0.0 | 1.0 |
| IKGLIOCC_25 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_26 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_27 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_28 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_29 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_30 | 1.0 | 0.0 | 1.0 |
| IKGLIOCC_31 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_32 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_33 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_34 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_35 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_36 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_37 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_38 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_39 | 1.0 | 0.0 | 1.0 |
| IKGLIOCC_40 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_41 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_42 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_43 | 1.0 | 0.0 | 1.0 |
| IKGLIOCC_44 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_45 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_46 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_47 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_48 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_49 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_50 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_51 | 1.0 | 0.0 | 1.0 |
| IKGLIOCC_52 | 1.0 | 0.0 | 1.0 |
| IKGLIOCC_53 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_54 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_55 | 1.0 | 0.0 | 1.0 |
| IKGLIOCC_56 | 1.0 | 0.0 | 1.0 |
| IKGLIOCC_57 | 1.0 | 0.0 | 1.0 |
| IKGLIOCC_58 | 1.0 | 0.0 | 1.0 |
| IKGLIOCC_59 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_60 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_61 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_62 | 1.0 | 0.0 | 1.0 |
| IKGLIOCC_63 | 0.0 | 1.0 | 0.0 |
| IKGLIOCC_64 | 1.0 | 0.0 | 1.0 |
| IKGLIOCC_65 | 1.0 | 0.0 | 1.0 |
| IKGLIOCC_66 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IKGLIOCC_2 | 92750 | 134176 | True | Siphoviridae | VOG0125, |
| IKGLIOCC_39 | 9549 | 26580 | False | Siphoviridae | VOG10909, |
Phigaro v2.4.0 (Database: Jan. 2024 release)