Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JOCLFNDL_6 | 131543 | 132433 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
| JOCLFNDL_2 | 87624 | 89549 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| JOCLFNDL_5 | 76 | 891 | sul2 | ARO:3000412 | sul2 | 100.00 | 100.00 | AY055428.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JOCLFNDL_5 | 76 | 891 | sul2 | Sulfamethoxazole | 100.00 | 100.00 | AY034138 |
| JOCLFNDL_2 | 87624 | 89549 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JOCLFNDL_6 | 131543 | 132430 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| JOCLFNDL_5 | 79 | 891 | sul2 | sulfonamide-resistant dihydropteroate synthase Sul2 | EXACTX | 100.00 | 100.00 | WP_001043260.1 |
| JOCLFNDL_2 | 87627 | 89549 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JOCLFNDL_49 | 2014 | 2693 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JOCLFNDL_1 | 0.0 | 1.0 | 0.0 |
| JOCLFNDL_2 | 0.0 | 1.0 | 0.0 |
| JOCLFNDL_3 | 0.0 | 1.0 | 0.0 |
| JOCLFNDL_4 | 0.0 | 1.0 | 0.0 |
| JOCLFNDL_5 | 0.0 | 1.0 | 0.0 |
| JOCLFNDL_6 | 0.0 | 1.0 | 0.0 |
| JOCLFNDL_7 | 0.0 | 1.0 | 0.0 |
| JOCLFNDL_8 | 0.0 | 1.0 | 0.0 |
| JOCLFNDL_9 | 0.0 | 1.0 | 0.0 |
| JOCLFNDL_10 | 0.0 | 1.0 | 0.0 |
| JOCLFNDL_11 | 0.0 | 1.0 | 0.0 |
| JOCLFNDL_12 | 0.0 | 1.0 | 0.0 |
| JOCLFNDL_13 | 0.0 | 1.0 | 0.0 |
| JOCLFNDL_14 | 0.0 | 1.0 | 0.0 |
| JOCLFNDL_15 | 0.0 | 1.0 | 0.0 |
| JOCLFNDL_16 | 0.0 | 1.0 | 0.0 |
| JOCLFNDL_17 | 0.0 | 1.0 | 0.0 |
| JOCLFNDL_18 | 0.0 | 1.0 | 0.0 |
| JOCLFNDL_19 | 0.0 | 1.0 | 0.0 |
| JOCLFNDL_20 | 0.0 | 1.0 | 0.0 |
| JOCLFNDL_21 | 0.0 | 1.0 | 0.0 |
| JOCLFNDL_22 | 0.0 | 1.0 | 0.0 |
| JOCLFNDL_23 | 0.0 | 1.0 | 0.0 |
| JOCLFNDL_24 | 0.0 | 1.0 | 0.0 |
| JOCLFNDL_25 | 0.0 | 1.0 | 0.0 |
| JOCLFNDL_26 | 0.0 | 1.0 | 0.0 |
| JOCLFNDL_27 | 0.0 | 1.0 | 0.0 |
| JOCLFNDL_28 | 0.0 | 1.0 | 0.0 |
| JOCLFNDL_29 | 1.0 | 0.0 | 1.0 |
| JOCLFNDL_30 | 0.0 | 1.0 | 0.0 |
| JOCLFNDL_31 | 0.0 | 1.0 | 0.0 |
| JOCLFNDL_32 | 0.0 | 1.0 | 0.0 |
| JOCLFNDL_33 | 0.0 | 1.0 | 0.0 |
| JOCLFNDL_34 | 0.0 | 1.0 | 0.0 |
| JOCLFNDL_35 | 0.0 | 1.0 | 0.0 |
| JOCLFNDL_36 | 1.0 | 0.0 | 1.0 |
| JOCLFNDL_37 | 0.0 | 1.0 | 0.0 |
| JOCLFNDL_38 | 1.0 | 0.0 | 1.0 |
| JOCLFNDL_39 | 1.0 | 0.0 | 1.0 |
| JOCLFNDL_40 | 1.0 | 0.0 | 1.0 |
| JOCLFNDL_41 | 1.0 | 0.0 | 1.0 |
| JOCLFNDL_42 | 0.0 | 1.0 | 0.0 |
| JOCLFNDL_43 | 1.0 | 0.0 | 1.0 |
| JOCLFNDL_44 | 1.0 | 0.0 | 1.0 |
| JOCLFNDL_45 | 1.0 | 0.0 | 1.0 |
| JOCLFNDL_46 | 1.0 | 0.0 | 1.0 |
| JOCLFNDL_47 | 1.0 | 0.0 | 1.0 |
| JOCLFNDL_48 | 0.0 | 1.0 | 0.0 |
| JOCLFNDL_49 | 1.0 | 0.0 | 1.0 |
| JOCLFNDL_50 | 1.0 | 0.0 | 1.0 |
| JOCLFNDL_51 | 1.0 | 0.0 | 1.0 |
| JOCLFNDL_52 | 1.0 | 0.0 | 1.0 |
| JOCLFNDL_53 | 1.0 | 0.0 | 1.0 |
| JOCLFNDL_54 | 1.0 | 0.0 | 1.0 |
| JOCLFNDL_56 | 1.0 | 0.0 | 1.0 |
| JOCLFNDL_57 | 1.0 | 0.0 | 1.0 |
| JOCLFNDL_58 | 1.0 | 0.0 | 1.0 |
| JOCLFNDL_59 | 1.0 | 0.0 | 1.0 |
| JOCLFNDL_60 | 1.0 | 0.0 | 1.0 |
| JOCLFNDL_61 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)