Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PMPLMOOJ_9 | 118402 | 119139 | ErmB | ARO:3000375 | ErmB | 98.37 | 98.79 | AF242872.1 |
| PMPLMOOJ_35 | 15828 | 17753 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PMPLMOOJ_9 | 115197 | 116063 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | KF864551 |
| PMPLMOOJ_9 | 118402 | 119139 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.86 | 100.00 | U18931 |
| PMPLMOOJ_35 | 15828 | 17753 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| PMPLMOOJ_3 | 249342 | 250559 | mef(A) | Erythromycin, Azithromycin | 94.99 | 100.00 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PMPLMOOJ_9 | 115200 | 116063 | aadE | aminoglycoside 6-adenylyltransferase AadE | EXACTX | 100.00 | 100.00 | WP_001255868.1 |
| PMPLMOOJ_9 | 118405 | 119139 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.59 | 100.00 | WP_002292226.1 |
| PMPLMOOJ_35 | 15828 | 17750 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| PMPLMOOJ_3 | 249342 | 250562 | mef(A) | macrolide efflux MFS transporter Mef(A) | INTERNAL_STOP | 98.53 | 99.75 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PMPLMOOJ_1 | 0.0 | 1.0 | 0.0 |
| PMPLMOOJ_2 | 0.0 | 1.0 | 0.0 |
| PMPLMOOJ_3 | 0.0 | 1.0 | 0.0 |
| PMPLMOOJ_4 | 0.0 | 1.0 | 0.0 |
| PMPLMOOJ_5 | 0.0 | 1.0 | 0.0 |
| PMPLMOOJ_6 | 0.0 | 1.0 | 0.0 |
| PMPLMOOJ_7 | 0.0 | 1.0 | 0.0 |
| PMPLMOOJ_8 | 0.0 | 1.0 | 0.0 |
| PMPLMOOJ_9 | 0.0 | 1.0 | 0.0 |
| PMPLMOOJ_10 | 0.0 | 1.0 | 0.0 |
| PMPLMOOJ_11 | 0.0 | 1.0 | 0.0 |
| PMPLMOOJ_12 | 0.0 | 1.0 | 0.0 |
| PMPLMOOJ_13 | 0.0 | 1.0 | 0.0 |
| PMPLMOOJ_14 | 0.0 | 1.0 | 0.0 |
| PMPLMOOJ_15 | 0.0 | 1.0 | 0.0 |
| PMPLMOOJ_16 | 0.0 | 1.0 | 0.0 |
| PMPLMOOJ_17 | 0.0 | 1.0 | 0.0 |
| PMPLMOOJ_18 | 0.0 | 1.0 | 0.0 |
| PMPLMOOJ_19 | 0.0 | 1.0 | 0.0 |
| PMPLMOOJ_20 | 0.0 | 1.0 | 0.0 |
| PMPLMOOJ_21 | 0.0 | 1.0 | 0.0 |
| PMPLMOOJ_22 | 0.0 | 1.0 | 0.0 |
| PMPLMOOJ_23 | 0.0 | 1.0 | 0.0 |
| PMPLMOOJ_24 | 0.0 | 1.0 | 0.0 |
| PMPLMOOJ_25 | 0.0 | 1.0 | 0.0 |
| PMPLMOOJ_26 | 0.0 | 1.0 | 0.0 |
| PMPLMOOJ_27 | 0.0 | 1.0 | 0.0 |
| PMPLMOOJ_28 | 0.0 | 1.0 | 0.0 |
| PMPLMOOJ_29 | 0.0 | 1.0 | 0.0 |
| PMPLMOOJ_30 | 0.0 | 1.0 | 0.0 |
| PMPLMOOJ_31 | 0.0 | 1.0 | 0.0 |
| PMPLMOOJ_32 | 0.0 | 1.0 | 0.0 |
| PMPLMOOJ_33 | 0.0 | 1.0 | 0.0 |
| PMPLMOOJ_34 | 0.0 | 1.0 | 0.0 |
| PMPLMOOJ_35 | 0.0 | 1.0 | 0.0 |
| PMPLMOOJ_36 | 0.0 | 1.0 | 0.0 |
| PMPLMOOJ_37 | 0.0 | 1.0 | 0.0 |
| PMPLMOOJ_38 | 0.0 | 1.0 | 0.0 |
| PMPLMOOJ_39 | 0.0 | 1.0 | 0.0 |
| PMPLMOOJ_40 | 0.0 | 1.0 | 0.0 |
| PMPLMOOJ_41 | 1.0 | 0.0 | 1.0 |
| PMPLMOOJ_42 | 1.0 | 0.0 | 1.0 |
| PMPLMOOJ_43 | 1.0 | 0.0 | 1.0 |
| PMPLMOOJ_44 | 1.0 | 0.0 | 1.0 |
| PMPLMOOJ_45 | 0.0 | 1.0 | 0.0 |
| PMPLMOOJ_46 | 1.0 | 0.0 | 1.0 |
| PMPLMOOJ_47 | 0.0 | 1.0 | 0.0 |
| PMPLMOOJ_50 | 0.0 | 1.0 | 0.0 |
| PMPLMOOJ_51 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PMPLMOOJ_21 | 13235 | 20779 | False | Siphoviridae | VOG7238, |
Phigaro v2.4.0 (Database: Jan. 2024 release)