Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LJGEIAPM_38 | 1422 | 1619 | CspA | 4.63e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
| LJGEIAPM_38 | 1422 | 1616 | CspR | 1.38e-29 | cold shock protein | 86.15 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LJGEIAPM_1 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_2 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_6 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_7 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_8 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_9 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_10 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_11 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_12 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_13 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_14 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_15 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_16 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_17 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_18 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_19 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_20 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_21 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_22 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_23 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_24 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_25 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_26 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_27 | 1.0 | 0.0 | 1.0 |
| LJGEIAPM_28 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_29 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_30 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_31 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_32 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_33 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_34 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_35 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_36 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_37 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_38 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_39 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_40 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_41 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_42 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_43 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_44 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_45 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_46 | 1.0 | 0.0 | 1.0 |
| LJGEIAPM_47 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_48 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_49 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_50 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_51 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_52 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_53 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_54 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_55 | 1.0 | 0.0 | 1.0 |
| LJGEIAPM_56 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_58 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_59 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_60 | 1.0 | 0.0 | 1.0 |
| LJGEIAPM_61 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_62 | 1.0 | 0.0 | 1.0 |
| LJGEIAPM_64 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_65 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_66 | 1.0 | 0.0 | 1.0 |
| LJGEIAPM_67 | 1.0 | 0.0 | 1.0 |
| LJGEIAPM_68 | 1.0 | 0.0 | 1.0 |
| LJGEIAPM_69 | 1.0 | 0.0 | 1.0 |
| LJGEIAPM_70 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_71 | 1.0 | 0.0 | 1.0 |
| LJGEIAPM_72 | 1.0 | 0.0 | 1.0 |
| LJGEIAPM_74 | 1.0 | 0.0 | 1.0 |
| LJGEIAPM_75 | 1.0 | 0.0 | 1.0 |
| LJGEIAPM_76 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_81 | 0.0 | 1.0 | 0.0 |
| LJGEIAPM_92 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LJGEIAPM_17 | 4229 | 28021 | False | Siphoviridae | VOG1637, VOG10223, VOG4856, VOG9997, VOG10972, VOG3462, VOG0801, VOG8263, VOG6698, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556 |
| LJGEIAPM_25 | 6796 | 12901 | False | Myoviridae | VOG0205, VOG0384, VOG0382 |
| LJGEIAPM_27 | 3609 | 14737 | False | Siphoviridae | VOG4693, VOG8685, VOG0189, VOG4566, VOG0514, VOG0226, VOG0283, VOG0535, VOG6135, VOG2228, VOG2228, VOG4552, VOG2228, VOG6450, VOG5353, VOG8520, VOG0862 |
Phigaro v2.4.0 (Database: Jan. 2024 release)