Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KKGGDLKP_3 | 176999 | 176295 | WalR | 1.59e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| KKGGDLKP_12 | 356578 | 356772 | CspR | 1.98e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| KKGGDLKP_12 | 356578 | 356775 | CspA | 3.03e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KKGGDLKP_1 | 1.0 | 0.0 | 1.0 |
| KKGGDLKP_3 | 0.0 | 1.0 | 0.0 |
| KKGGDLKP_4 | 0.0 | 1.0 | 0.0 |
| KKGGDLKP_5 | 0.0 | 1.0 | 0.0 |
| KKGGDLKP_8 | 1.0 | 0.0 | 1.0 |
| KKGGDLKP_9 | 0.0 | 1.0 | 0.0 |
| KKGGDLKP_10 | 1.0 | 0.0 | 1.0 |
| KKGGDLKP_12 | 0.0 | 1.0 | 0.0 |
| KKGGDLKP_15 | 0.0 | 1.0 | 0.0 |
| KKGGDLKP_16 | 1.0 | 0.0 | 1.0 |
| KKGGDLKP_17 | 1.0 | 0.0 | 1.0 |
| KKGGDLKP_21 | 0.0 | 1.0 | 0.0 |
| KKGGDLKP_24 | 1.0 | 0.0 | 1.0 |
| KKGGDLKP_28 | 0.0 | 1.0 | 0.0 |
| KKGGDLKP_29 | 1.0 | 0.0 | 1.0 |
| KKGGDLKP_31 | 1.0 | 0.0 | 1.0 |
| KKGGDLKP_33 | 0.0 | 1.0 | 0.0 |
| KKGGDLKP_36 | 1.0 | 0.0 | 1.0 |
| KKGGDLKP_38 | 1.0 | 0.0 | 1.0 |
| KKGGDLKP_39 | 1.0 | 0.0 | 1.0 |
| KKGGDLKP_41 | 1.0 | 0.0 | 1.0 |
| KKGGDLKP_45 | 0.0 | 1.0 | 0.0 |
| KKGGDLKP_47 | 1.0 | 0.0 | 1.0 |
| KKGGDLKP_48 | 1.0 | 0.0 | 1.0 |
| KKGGDLKP_52 | 0.0 | 1.0 | 0.0 |
| KKGGDLKP_54 | 0.0 | 1.0 | 0.0 |
| KKGGDLKP_60 | 0.0 | 1.0 | 0.0 |
| KKGGDLKP_62 | 0.0 | 1.0 | 0.0 |
| KKGGDLKP_63 | 1.0 | 0.0 | 1.0 |
| KKGGDLKP_65 | 0.0 | 1.0 | 0.0 |
| KKGGDLKP_68 | 0.0 | 1.0 | 0.0 |
| KKGGDLKP_70 | 1.0 | 0.0 | 1.0 |
| KKGGDLKP_73 | 0.0 | 1.0 | 0.0 |
| KKGGDLKP_74 | 0.0 | 1.0 | 0.0 |
| KKGGDLKP_75 | 0.0 | 1.0 | 0.0 |
| KKGGDLKP_80 | 0.0 | 1.0 | 0.0 |
| KKGGDLKP_81 | 1.0 | 0.0 | 1.0 |
| KKGGDLKP_84 | 0.0 | 1.0 | 0.0 |
| KKGGDLKP_85 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KKGGDLKP_9 | 168225 | 197137 | False | Siphoviridae | VOG0753, VOG9998, VOG8870, VOG10957, VOG4599, VOG4605, VOG5631, VOG0660, VOG5852, VOG4586, VOG0207, VOG9583, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG7540, VOG1886, VOG4581, VOG4841, VOG9214, VOG0198, VOG3643, VOG9671, VOG6005 |
| KKGGDLKP_9 | 277438 | 313125 | False | Siphoviridae | VOG8294, VOG0602, VOG1637, VOG4705, VOG4334, VOG4626, VOG10365, VOG3462, VOG0801, VOG4910, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG6115, VOG8360, VOG3643, VOG9671, VOG5258, VOG5317, VOG5280, VOG0514, VOG4799, VOG0226, VOG0650, VOG6179, VOG9500, VOG4552, VOG3622, VOG6495 |
| KKGGDLKP_21 | 54765 | 81962 | False | Siphoviridae | VOG4566, VOG4566, VOG0189, VOG6005, VOG0198, VOG4841, VOG0741, VOG7810, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG8239, VOG0207, VOG4586, VOG0209, VOG0660, VOG5904, VOG4605, VOG4599, VOG10957, VOG8870 |
| KKGGDLKP_52 | 7800 | 36832 | False | Siphoviridae | VOG1637, VOG8294, VOG3498, VOG10608, VOG1335, VOG4545, VOG1334, VOG1333, VOG4634, VOG0704, VOG1353, VOG1330, VOG4713, VOG1887, VOG3434, VOG10901, VOG4564, VOG7038, VOG0720, VOG10227, VOG0796, VOG0638, VOG0198, VOG5878 |
Phigaro v2.4.0 (Database: Jan. 2024 release)