Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OHBFBPDH_7 | 498075 | 498779 | WalR | 5.81e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| OHBFBPDH_5 | 275136 | 274942 | CspR | 3.78e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| OHBFBPDH_5 | 275136 | 274939 | CspA | 5.80e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OHBFBPDH_1 | 0.0 | 1.0 | 0.0 |
| OHBFBPDH_2 | 0.0 | 1.0 | 0.0 |
| OHBFBPDH_3 | 0.0 | 1.0 | 0.0 |
| OHBFBPDH_4 | 0.0 | 1.0 | 0.0 |
| OHBFBPDH_5 | 0.0 | 1.0 | 0.0 |
| OHBFBPDH_6 | 0.0 | 1.0 | 0.0 |
| OHBFBPDH_7 | 0.0 | 1.0 | 0.0 |
| OHBFBPDH_8 | 0.0 | 1.0 | 0.0 |
| OHBFBPDH_9 | 0.0 | 1.0 | 0.0 |
| OHBFBPDH_10 | 0.0 | 1.0 | 0.0 |
| OHBFBPDH_11 | 0.0 | 1.0 | 0.0 |
| OHBFBPDH_12 | 0.0 | 1.0 | 0.0 |
| OHBFBPDH_13 | 0.0 | 1.0 | 0.0 |
| OHBFBPDH_14 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OHBFBPDH_7 | 6728 | 22814 | False | Siphoviridae | VOG8917, VOG4856, VOG4619, VOG0801, VOG0801, VOG1323, VOG0725, VOG0799, VOG1321, VOG5660, VOG1320, VOG4713, VOG4711, VOG4555, VOG6965 |
| OHBFBPDH_7 | 1018029 | 1042081 | False | Siphoviridae | VOG0866, VOG0054, VOG0753, VOG4918, VOG4705, VOG0804, VOG9640, VOG4856, VOG4619, VOG4599, VOG4633, VOG6163, VOG0725, VOG0799, VOG0724, VOG9583, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG3699 |
| OHBFBPDH_8 | 85982 | 86994 | False | Siphoviridae | VOG2602, VOG0044 |
Phigaro v2.4.0 (Database: Jan. 2024 release)