Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HHBHGMID_21 | 34016 | 34720 | WalR | 9.81e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HHBHGMID_1 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_2 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_3 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_4 | 1.0 | 0.0 | 1.0 |
| HHBHGMID_5 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_6 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_7 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_8 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_9 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_10 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_11 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_12 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_13 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_14 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_15 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_16 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_17 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_18 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_19 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_20 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_21 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_22 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_23 | 1.0 | 0.0 | 1.0 |
| HHBHGMID_24 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_25 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_26 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_27 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_28 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_29 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_30 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_31 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_32 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_33 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_34 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_35 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_36 | 1.0 | 0.0 | 1.0 |
| HHBHGMID_37 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_38 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_39 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_40 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_41 | 1.0 | 0.0 | 1.0 |
| HHBHGMID_42 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_43 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_44 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_45 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_46 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_47 | 1.0 | 0.0 | 1.0 |
| HHBHGMID_48 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_49 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_50 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_51 | 1.0 | 0.0 | 1.0 |
| HHBHGMID_52 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_53 | 1.0 | 0.0 | 1.0 |
| HHBHGMID_54 | 1.0 | 0.0 | 1.0 |
| HHBHGMID_55 | 1.0 | 0.0 | 1.0 |
| HHBHGMID_56 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_57 | 0.0 | 1.0 | 0.0 |
| HHBHGMID_58 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HHBHGMID_8 | 1 | 24211 | False | Siphoviridae | VOG0054, VOG1637, VOG7896, VOG6455, VOG4599, VOG4605, VOG0083, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG10303, VOG4553, VOG4568, VOG4556, VOG3644, VOG4544, VOG4581, VOG4841, VOG0531, VOG10904, VOG4570, VOG6579, VOG4892 |
| HHBHGMID_22 | 2092 | 9555 | False | Siphoviridae | VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG0205, VOG4606, VOG4632 |
| HHBHGMID_29 | 16268 | 46113 | False | Siphoviridae | VOG4552, VOG0181, VOG10867, VOG4600, VOG1309, VOG11003, VOG11060, VOG4566, VOG0189, VOG5998, VOG5562, VOG4693, VOG0744, VOG4673, VOG4841, VOG0519, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG1898, VOG4545, VOG4545, VOG4633, VOG4763, VOG3498, VOG0648, VOG1637, VOG0054, VOG4649 |
| HHBHGMID_32 | 4283 | 6205 | False | Siphoviridae | VOG1637, VOG0703, VOG0703 |
Phigaro v2.4.0 (Database: Jan. 2024 release)