Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 1 | 8 | 8.31 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JHHGEFGI_2 | 272309 | 273685 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 86.93 | 100.00 | X08034 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JHHGEFGI_2 | 272309 | 273679 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.87 | 99.78 | WP_003242953.1 |
| JHHGEFGI_2 | 271578 | 272096 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 80.35 | 100.00 | WP_003242546.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| JHHGEFGI_3 | 28058 | 29239 | capB | 0.0 | Capsule | Immune modulation | 82.29 | 99.66 | NP_391471 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JHHGEFGI_18 | 27969 | 26833 | tufA | 0.0 | elongation factor Tu | 86.54 | 95.69 | AHM69299 |
| JHHGEFGI_24 | 12423 | 11554 | pdxS | 8.73e-153 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| JHHGEFGI_1 | 336344 | 335568 | CodY | 7.99e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| JHHGEFGI_5 | 152259 | 151867 | spxA1 | 6.94e-70 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| JHHGEFGI_6 | 77500 | 77303 | CspA | 1.32e-31 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| JHHGEFGI_4 | 216431 | 216237 | CspD | 9.37e-28 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| JHHGEFGI_15 | 43859 | 44053 | CspB | 1.67e-27 | cold shock protein | 84.61 | 98.48 | CAD00094 |
| JHHGEFGI_6 | 77500 | 77306 | CspR | 1.73e-26 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| JHHGEFGI_3 | 381892 | 382764 | lipA (SAUSA300_0829) | 1.27e-162 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JHHGEFGI_1 | 0.0 | 1.0 | 0.0 |
| JHHGEFGI_2 | 0.0 | 1.0 | 0.0 |
| JHHGEFGI_3 | 0.0 | 1.0 | 0.0 |
| JHHGEFGI_4 | 0.0 | 1.0 | 0.0 |
| JHHGEFGI_5 | 0.0 | 1.0 | 0.0 |
| JHHGEFGI_6 | 0.0 | 1.0 | 0.0 |
| JHHGEFGI_7 | 0.0 | 1.0 | 0.0 |
| JHHGEFGI_8 | 0.0 | 1.0 | 0.0 |
| JHHGEFGI_9 | 1.0 | 0.0 | 1.0 |
| JHHGEFGI_10 | 0.0 | 1.0 | 0.0 |
| JHHGEFGI_11 | 0.0 | 1.0 | 0.0 |
| JHHGEFGI_12 | 0.0 | 1.0 | 0.0 |
| JHHGEFGI_13 | 0.0 | 1.0 | 0.0 |
| JHHGEFGI_14 | 0.0 | 1.0 | 0.0 |
| JHHGEFGI_15 | 0.0 | 1.0 | 0.0 |
| JHHGEFGI_16 | 1.0 | 0.0 | 1.0 |
| JHHGEFGI_17 | 0.0 | 1.0 | 0.0 |
| JHHGEFGI_18 | 0.0 | 1.0 | 0.0 |
| JHHGEFGI_19 | 0.0 | 1.0 | 0.0 |
| JHHGEFGI_20 | 0.0 | 1.0 | 0.0 |
| JHHGEFGI_21 | 0.0 | 1.0 | 0.0 |
| JHHGEFGI_22 | 0.0 | 1.0 | 0.0 |
| JHHGEFGI_23 | 0.0 | 1.0 | 0.0 |
| JHHGEFGI_24 | 0.0 | 1.0 | 0.0 |
| JHHGEFGI_25 | 0.0 | 1.0 | 0.0 |
| JHHGEFGI_26 | 0.0 | 1.0 | 0.0 |
| JHHGEFGI_27 | 0.0 | 1.0 | 0.0 |
| JHHGEFGI_28 | 0.0 | 1.0 | 0.0 |
| JHHGEFGI_29 | 1.0 | 0.0 | 1.0 |
| JHHGEFGI_30 | 0.0 | 1.0 | 0.0 |
| JHHGEFGI_31 | 1.0 | 0.0 | 1.0 |
| JHHGEFGI_35 | 1.0 | 0.0 | 1.0 |
| JHHGEFGI_36 | 1.0 | 0.0 | 1.0 |
| JHHGEFGI_37 | 0.0 | 1.0 | 0.0 |
| JHHGEFGI_38 | 1.0 | 0.0 | 1.0 |
| JHHGEFGI_40 | 1.0 | 0.0 | 1.0 |
| JHHGEFGI_41 | 1.0 | 0.0 | 1.0 |
| JHHGEFGI_42 | 1.0 | 0.0 | 1.0 |
| JHHGEFGI_45 | 0.0 | 1.0 | 0.0 |
| JHHGEFGI_46 | 1.0 | 0.0 | 1.0 |
| JHHGEFGI_47 | 1.0 | 0.0 | 1.0 |
| JHHGEFGI_48 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JHHGEFGI_5 | 35637 | 61582 | False | Myoviridae | VOG0753, VOG7895, VOG3390, VOG7718, VOG4862, VOG4691, VOG4550, VOG3894, VOG4885, VOG4865, VOG6163, VOG3892, VOG3891, VOG3890, VOG10055, VOG0749, VOG4685, VOG4773, VOG10227, VOG0796, VOG5447, VOG4861, VOG0189 |
Phigaro v2.4.0 (Database: Jan. 2024 release)