Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LLMNCFNK_1 | 2481517 | 2482221 | WalR | 2.14e-111 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LLMNCFNK_1 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LLMNCFNK_1 | 75266 | 118587 | False | Siphoviridae | VOG1305, VOG5709, VOG2338, VOG1309, VOG0186, VOG9438, VOG4566, VOG0226, VOG10904, VOG11003, VOG9860, VOG0536, VOG9741, VOG2820, VOG3643, VOG3643, VOG0044, VOG1563, VOG0198, VOG4570, VOG0796, VOG4544, VOG0720, VOG4564, VOG5616, VOG1183, VOG0637, VOG4555, VOG3434, VOG1887, VOG1322, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4545, VOG4605, VOG4599, VOG6455, VOG7896, VOG1637, VOG0703, VOG4918 |
| LLMNCFNK_1 | 522717 | 562158 | False | Siphoviridae | VOG0275, VOG3200, VOG6495, VOG10397, VOG0707, VOG0181, VOG10867, VOG4967, VOG3642, VOG0321, VOG0322, VOG4548, VOG1549, VOG6545, VOG4606, VOG0327, VOG9759, VOG9741, VOG4237, VOG0152, VOG3643, VOG0102, VOG0198, VOG5088, VOG4570, VOG4549, VOG1345, VOG4841, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG5852, VOG6163, VOG4605, VOG4599, VOG6455, VOG7896, VOG1637, VOG0703, VOG4918 |
| LLMNCFNK_1 | 1851373 | 1868204 | True | Siphoviridae | VOG0944, VOG8387, VOG5532, VOG4549, VOG4570, VOG4570, VOG5088, VOG5532, VOG8387, VOG0944, VOG0944, VOG0198, VOG3307, VOG5317, VOG5280, VOG0982, VOG0189, VOG4799, VOG10867, VOG0181 |
Phigaro v2.4.0 (Database: Jan. 2024 release)