Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JPAADKMP_36 | 17400 | 19325 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| JPAADKMP_72 | 11677 | 12642 | CfxA3 | ARO:3003003 | CfxA3 | 99.69 | 100.00 | AF472622.2 |
| JPAADKMP_53 | 4265 | 5401 | tet(X) | ARO:3000205 | tet(X) | 99.74 | 97.42 | M37699.1 |
| JPAADKMP_53 | 3252 | 4052 | ErmF | ARO:3000498 | ErmF | 99.62 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JPAADKMP_53 | 3252 | 4052 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| JPAADKMP_53 | 4265 | 5431 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.91 | 100.00 | M37699 |
| JPAADKMP_72 | 11677 | 12642 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| JPAADKMP_36 | 17400 | 19325 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JPAADKMP_53 | 3252 | 4049 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| JPAADKMP_53 | 4268 | 5431 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| JPAADKMP_72 | 11680 | 12642 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | BLASTX | 99.69 | 100.00 | WP_004348227.1 |
| JPAADKMP_36 | 17403 | 19325 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JPAADKMP_1 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_2 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_3 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_4 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_5 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_6 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_7 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_8 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_9 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_10 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_11 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_12 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_13 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_14 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_15 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_16 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_17 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_18 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_19 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_20 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_21 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_22 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_23 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_24 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_25 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_26 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_27 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_28 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_29 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_30 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_31 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_32 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_33 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_34 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_35 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_36 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_37 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_38 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_39 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_40 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_41 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_42 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_43 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_44 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_45 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_46 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_47 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_48 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_49 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_50 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_51 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_52 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_53 | 1.0 | 0.0 | 1.0 |
| JPAADKMP_54 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_55 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_56 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_57 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_58 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_59 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_60 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_61 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_62 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_63 | 1.0 | 0.0 | 1.0 |
| JPAADKMP_64 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_65 | 1.0 | 0.0 | 1.0 |
| JPAADKMP_66 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_67 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_68 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_69 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_70 | 1.0 | 0.0 | 1.0 |
| JPAADKMP_71 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_72 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_73 | 1.0 | 0.0 | 1.0 |
| JPAADKMP_74 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_75 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_76 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_77 | 1.0 | 0.0 | 1.0 |
| JPAADKMP_78 | 1.0 | 0.0 | 1.0 |
| JPAADKMP_79 | 1.0 | 0.0 | 1.0 |
| JPAADKMP_80 | 1.0 | 0.0 | 1.0 |
| JPAADKMP_81 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_82 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_83 | 1.0 | 0.0 | 1.0 |
| JPAADKMP_84 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_85 | 1.0 | 0.0 | 1.0 |
| JPAADKMP_86 | 1.0 | 0.0 | 1.0 |
| JPAADKMP_87 | 1.0 | 0.0 | 1.0 |
| JPAADKMP_88 | 1.0 | 0.0 | 1.0 |
| JPAADKMP_89 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_90 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_91 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_93 | 1.0 | 0.0 | 1.0 |
| JPAADKMP_94 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_95 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_96 | 1.0 | 0.0 | 1.0 |
| JPAADKMP_97 | 1.0 | 0.0 | 1.0 |
| JPAADKMP_98 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_100 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_101 | 1.0 | 0.0 | 1.0 |
| JPAADKMP_102 | 0.0 | 1.0 | 0.0 |
| JPAADKMP_103 | 1.0 | 0.0 | 1.0 |
| JPAADKMP_104 | 1.0 | 0.0 | 1.0 |
| JPAADKMP_105 | 1.0 | 0.0 | 1.0 |
| JPAADKMP_106 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)