Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GNOICDCE_78 | 20768 | 21472 | WalR | 7.73e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| GNOICDCE_15 | 14108 | 14305 | CspR | 1.15e-33 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GNOICDCE_1 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_2 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_3 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_4 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_5 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_6 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_7 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_8 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_9 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_10 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_11 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_12 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_13 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_14 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_15 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_16 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_17 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_18 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_19 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_20 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_21 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_22 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_23 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_24 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_25 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_26 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_27 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_28 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_29 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_30 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_31 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_32 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_33 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_34 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_35 | 1.0 | 0.0 | 1.0 |
| GNOICDCE_36 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_37 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_38 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_39 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_40 | 1.0 | 0.0 | 1.0 |
| GNOICDCE_41 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_42 | 1.0 | 0.0 | 1.0 |
| GNOICDCE_43 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_44 | 1.0 | 0.0 | 1.0 |
| GNOICDCE_45 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_46 | 1.0 | 0.0 | 1.0 |
| GNOICDCE_47 | 1.0 | 0.0 | 1.0 |
| GNOICDCE_48 | 1.0 | 0.0 | 1.0 |
| GNOICDCE_49 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_50 | 1.0 | 0.0 | 1.0 |
| GNOICDCE_51 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_52 | 1.0 | 0.0 | 1.0 |
| GNOICDCE_53 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_54 | 1.0 | 0.0 | 1.0 |
| GNOICDCE_55 | 1.0 | 0.0 | 1.0 |
| GNOICDCE_56 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_57 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_58 | 1.0 | 0.0 | 1.0 |
| GNOICDCE_59 | 1.0 | 0.0 | 1.0 |
| GNOICDCE_61 | 1.0 | 0.0 | 1.0 |
| GNOICDCE_63 | 1.0 | 0.0 | 1.0 |
| GNOICDCE_64 | 1.0 | 0.0 | 1.0 |
| GNOICDCE_66 | 1.0 | 0.0 | 1.0 |
| GNOICDCE_67 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_69 | 1.0 | 0.0 | 1.0 |
| GNOICDCE_78 | 0.0 | 1.0 | 0.0 |
| GNOICDCE_82 | 1.0 | 0.0 | 1.0 |
| GNOICDCE_86 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GNOICDCE_1 | 176777 | 185030 | False | Siphoviridae | VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556 |
| GNOICDCE_15 | 33945 | 71011 | False | Siphoviridae | VOG9500, VOG6179, VOG11003, VOG11003, VOG6495, VOG7236, VOG8241, VOG1309, VOG0186, VOG4566, VOG0189, VOG9860, VOG6623, VOG4693, VOG10869, VOG0198, VOG1315, VOG4403, VOG4570, VOG4549, VOG0796, VOG4544, VOG0720, VOG4564, VOG5616, VOG1300, VOG4555, VOG1329, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4605, VOG4599, VOG7896, VOG7888, VOG0054, VOG4918 |
Phigaro v2.4.0 (Database: Jan. 2024 release)