Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| ABKGMGNJ_49 | 103221 | 103922 | WalR | 1.53e-108 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| ABKGMGNJ_27 | 5126 | 6055 | rep28 | 930 / 930 | 98.49 | CP003162 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ABKGMGNJ_1 | 0.0 | 1.0 | 0.0 |
| ABKGMGNJ_2 | 0.0 | 1.0 | 0.0 |
| ABKGMGNJ_3 | 0.0 | 1.0 | 0.0 |
| ABKGMGNJ_4 | 0.0 | 1.0 | 0.0 |
| ABKGMGNJ_5 | 0.0 | 1.0 | 0.0 |
| ABKGMGNJ_6 | 0.0 | 1.0 | 0.0 |
| ABKGMGNJ_7 | 0.0 | 1.0 | 0.0 |
| ABKGMGNJ_8 | 0.0 | 1.0 | 0.0 |
| ABKGMGNJ_9 | 0.0 | 1.0 | 0.0 |
| ABKGMGNJ_10 | 1.0 | 0.0 | 1.0 |
| ABKGMGNJ_11 | 0.0 | 1.0 | 0.0 |
| ABKGMGNJ_12 | 0.0 | 1.0 | 0.0 |
| ABKGMGNJ_13 | 0.0 | 1.0 | 0.0 |
| ABKGMGNJ_14 | 0.0 | 1.0 | 0.0 |
| ABKGMGNJ_15 | 0.0 | 1.0 | 0.0 |
| ABKGMGNJ_16 | 0.0 | 1.0 | 0.0 |
| ABKGMGNJ_17 | 0.0 | 1.0 | 0.0 |
| ABKGMGNJ_18 | 1.0 | 0.0 | 1.0 |
| ABKGMGNJ_19 | 0.0 | 1.0 | 0.0 |
| ABKGMGNJ_20 | 0.0 | 1.0 | 0.0 |
| ABKGMGNJ_21 | 0.0 | 1.0 | 0.0 |
| ABKGMGNJ_22 | 1.0 | 0.0 | 1.0 |
| ABKGMGNJ_23 | 0.0 | 1.0 | 0.0 |
| ABKGMGNJ_24 | 0.0 | 1.0 | 0.0 |
| ABKGMGNJ_25 | 1.0 | 0.0 | 1.0 |
| ABKGMGNJ_26 | 1.0 | 0.0 | 1.0 |
| ABKGMGNJ_27 | 1.0 | 0.0 | 1.0 |
| ABKGMGNJ_28 | 1.0 | 0.0 | 1.0 |
| ABKGMGNJ_29 | 1.0 | 0.0 | 1.0 |
| ABKGMGNJ_30 | 1.0 | 0.0 | 1.0 |
| ABKGMGNJ_32 | 1.0 | 0.0 | 1.0 |
| ABKGMGNJ_33 | 1.0 | 0.0 | 1.0 |
| ABKGMGNJ_34 | 0.0 | 1.0 | 0.0 |
| ABKGMGNJ_35 | 1.0 | 0.0 | 1.0 |
| ABKGMGNJ_36 | 1.0 | 0.0 | 1.0 |
| ABKGMGNJ_37 | 1.0 | 0.0 | 1.0 |
| ABKGMGNJ_39 | 1.0 | 0.0 | 1.0 |
| ABKGMGNJ_45 | 0.0 | 1.0 | 0.0 |
| ABKGMGNJ_47 | 0.0 | 1.0 | 0.0 |
| ABKGMGNJ_48 | 0.0 | 1.0 | 0.0 |
| ABKGMGNJ_49 | 0.0 | 1.0 | 0.0 |
| ABKGMGNJ_50 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ABKGMGNJ_1 | 192658 | 226488 | False | Siphoviridae | VOG0703, VOG4705, VOG9955, VOG10972, VOG4599, VOG4605, VOG5904, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG4581, VOG4841, VOG6725, VOG0198, VOG0149, VOG1183, VOG4732, VOG6970, VOG3643, VOG3307, VOG0044, VOG3480, VOG0052, VOG1246, VOG4566, VOG0514, VOG0226, VOG0283, VOG0535, VOG0535, VOG11003 |
| ABKGMGNJ_5 | 23975 | 54762 | False | Myoviridae | VOG0861, VOG7896, VOG0870, VOG4845, VOG4691, VOG0573, VOG1348, VOG1433, VOG1956, VOG4910, VOG4699, VOG1352, VOG1883, VOG1881, VOG1353, VOG4710, VOG1887, VOG3434, VOG4555, VOG4564, VOG0720, VOG4544, VOG4602, VOG0275, VOG0796, VOG5446, VOG0198 |
| ABKGMGNJ_5 | 58133 | 72153 | True | Siphoviridae | VOG7685, VOG0514, VOG0025, VOG4799, VOG0226, VOG0322, VOG0685, VOG6495, VOG0650, VOG3246, VOG4552, VOG1656, VOG8520, VOG0862, VOG1561, VOG0275, VOG0275 |
| ABKGMGNJ_10 | 2559 | 32884 | False | Myoviridae | VOG4845, VOG4691, VOG4550, VOG0573, VOG1348, VOG1433, VOG1956, VOG6163, VOG5068, VOG6131, VOG4699, VOG1352, VOG1883, VOG1881, VOG1353, VOG4778, VOG1942, VOG2779, VOG1915, VOG4865, VOG4564, VOG1912, VOG10227, VOG0796, VOG0198, VOG4010, VOG0044, VOG6005, VOG4693, VOG7236, VOG0186 |
Phigaro v2.4.0 (Database: Jan. 2024 release)