Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KMLDDNCB_12 | 445264 | 444560 | WalR | 2.75e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| KMLDDNCB_23 | 67044 | 66850 | CspR | 8.42e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| KMLDDNCB_23 | 67044 | 66847 | CspA | 1.29e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| KMLDDNCB_8 | 5701 | 6798 | repUS73 | 1098 / 1101 | 96.63 | CP002654 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KMLDDNCB_1 | 0.0 | 1.0 | 0.0 |
| KMLDDNCB_2 | 0.0 | 1.0 | 0.0 |
| KMLDDNCB_3 | 0.0 | 1.0 | 0.0 |
| KMLDDNCB_4 | 0.0 | 1.0 | 0.0 |
| KMLDDNCB_5 | 0.0 | 1.0 | 0.0 |
| KMLDDNCB_6 | 0.0 | 1.0 | 0.0 |
| KMLDDNCB_7 | 0.0 | 1.0 | 0.0 |
| KMLDDNCB_8 | 1.0 | 0.0 | 1.0 |
| KMLDDNCB_9 | 0.0 | 1.0 | 0.0 |
| KMLDDNCB_10 | 0.0 | 1.0 | 0.0 |
| KMLDDNCB_11 | 0.0 | 1.0 | 0.0 |
| KMLDDNCB_12 | 0.0 | 1.0 | 0.0 |
| KMLDDNCB_13 | 0.0 | 1.0 | 0.0 |
| KMLDDNCB_14 | 0.0 | 1.0 | 0.0 |
| KMLDDNCB_16 | 1.0 | 0.0 | 1.0 |
| KMLDDNCB_21 | 0.0 | 1.0 | 0.0 |
| KMLDDNCB_22 | 0.0 | 1.0 | 0.0 |
| KMLDDNCB_23 | 0.0 | 1.0 | 0.0 |
| KMLDDNCB_24 | 0.0 | 1.0 | 0.0 |
| KMLDDNCB_25 | 0.0 | 1.0 | 0.0 |
| KMLDDNCB_26 | 0.0 | 1.0 | 0.0 |
| KMLDDNCB_27 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KMLDDNCB_3 | 122476 | 155148 | False | Siphoviridae | VOG9655, VOG0181, VOG7298, VOG1309, VOG0186, VOG4566, VOG4693, VOG0586, VOG5047, VOG0198, VOG1844, VOG0638, VOG0796, VOG4544, VOG0720, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG4545, VOG1335, VOG10608, VOG3498 |
| KMLDDNCB_12 | 447552 | 457623 | False | Siphoviridae | VOG0204, VOG4553, VOG4556, VOG4544, VOG4581, VOG4841, VOG0205, VOG6414, VOG4609 |
| KMLDDNCB_25 | 32853 | 58397 | False | Siphoviridae | VOG9998, VOG8870, VOG10957, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4568, VOG4556, VOG6939, VOG1886, VOG4581, VOG4841 |
| KMLDDNCB_26 | 65372 | 99497 | False | Siphoviridae | VOG4602, VOG6495, VOG3556, VOG6139, VOG8615, VOG3547, VOG3549, VOG0650, VOG1309, VOG0186, VOG4566, VOG4552, VOG4693, VOG0586, VOG5878, VOG0198, VOG0045, VOG0611, VOG0691, VOG0692, VOG9317, VOG4711, VOG0695, VOG0696, VOG0697, VOG6548, VOG9763, VOG0701, VOG0801, VOG4619 |
Phigaro v2.4.0 (Database: Jan. 2024 release)