Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PEACOLHK_1 | 458281 | 457577 | WalR | 3.74e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| PEACOLHK_19 | 112049 | 112243 | CspR | 7.90e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| PEACOLHK_19 | 112049 | 112246 | CspA | 1.21e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PEACOLHK_14 | 1063 | 1992 | rep28 | 930 / 930 | 98.71 | CP003162 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PEACOLHK_1 | 0.0 | 1.0 | 0.0 |
| PEACOLHK_2 | 0.0 | 1.0 | 0.0 |
| PEACOLHK_3 | 0.0 | 1.0 | 0.0 |
| PEACOLHK_4 | 0.0 | 1.0 | 0.0 |
| PEACOLHK_5 | 0.0 | 1.0 | 0.0 |
| PEACOLHK_6 | 0.0 | 1.0 | 0.0 |
| PEACOLHK_7 | 1.0 | 0.0 | 1.0 |
| PEACOLHK_8 | 0.0 | 1.0 | 0.0 |
| PEACOLHK_9 | 0.0 | 1.0 | 0.0 |
| PEACOLHK_10 | 0.0 | 1.0 | 0.0 |
| PEACOLHK_11 | 0.0 | 1.0 | 0.0 |
| PEACOLHK_12 | 0.0 | 1.0 | 0.0 |
| PEACOLHK_13 | 0.0 | 1.0 | 0.0 |
| PEACOLHK_14 | 1.0 | 0.0 | 1.0 |
| PEACOLHK_15 | 1.0 | 0.0 | 1.0 |
| PEACOLHK_19 | 0.0 | 1.0 | 0.0 |
| PEACOLHK_20 | 0.0 | 1.0 | 0.0 |
| PEACOLHK_21 | 0.0 | 1.0 | 0.0 |
| PEACOLHK_22 | 0.0 | 1.0 | 0.0 |
| PEACOLHK_23 | 0.0 | 1.0 | 0.0 |
| PEACOLHK_24 | 0.0 | 1.0 | 0.0 |
| PEACOLHK_25 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PEACOLHK_12 | 9552 | 37009 | False | Siphoviridae | VOG4566, VOG4566, VOG0189, VOG6005, VOG0198, VOG4841, VOG0741, VOG7810, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG8239, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG10957, VOG8870 |
| PEACOLHK_20 | 16717 | 47813 | False | Siphoviridae | VOG9805, VOG7896, VOG6373, VOG8438, VOG3463, VOG3462, VOG0801, VOG3636, VOG1323, VOG0725, VOG0799, VOG5660, VOG0723, VOG4713, VOG1887, VOG3434, VOG4564, VOG0720, VOG10227, VOG0796, VOG5616, VOG1183, VOG5709, VOG0198, VOG1049, VOG3643, VOG0044, VOG4693, VOG4566, VOG0186, VOG1309, VOG1302 |
| PEACOLHK_24 | 159256 | 161046 | False | Unknown | VOG5944, VOG2154, VOG5944, VOG2154 |
Phigaro v2.4.0 (Database: Jan. 2024 release)