Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GEMNEGCL_103 | 742 | 1533 | aadA | ARO:3002601 | aadA | 100.00 | 127.76 | AF550679.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GEMNEGCL_103 | 742 | 1530 | aadA1 | ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1 | EXACTX | 100.00 | 100.00 | WP_001206316.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GEMNEGCL_103 | 1951 | 2081 | ColRNAI | 131 / 130 | 87.02 | DQ298019 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GEMNEGCL_1 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_3 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_4 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_5 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_6 | 1.0 | 0.0 | 1.0 |
| GEMNEGCL_8 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_9 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_10 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_11 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_12 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_13 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_14 | 1.0 | 0.0 | 1.0 |
| GEMNEGCL_16 | 1.0 | 0.0 | 1.0 |
| GEMNEGCL_17 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_18 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_19 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_20 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_21 | 1.0 | 0.0 | 1.0 |
| GEMNEGCL_22 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_23 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_24 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_25 | 1.0 | 0.0 | 1.0 |
| GEMNEGCL_26 | 1.0 | 0.0 | 1.0 |
| GEMNEGCL_27 | 1.0 | 0.0 | 1.0 |
| GEMNEGCL_28 | 1.0 | 0.0 | 1.0 |
| GEMNEGCL_29 | 1.0 | 0.0 | 1.0 |
| GEMNEGCL_30 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_31 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_32 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_33 | 1.0 | 0.0 | 1.0 |
| GEMNEGCL_34 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_35 | 1.0 | 0.0 | 1.0 |
| GEMNEGCL_36 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_37 | 1.0 | 0.0 | 1.0 |
| GEMNEGCL_38 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_39 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_40 | 1.0 | 0.0 | 1.0 |
| GEMNEGCL_41 | 1.0 | 0.0 | 1.0 |
| GEMNEGCL_42 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_43 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_44 | 1.0 | 0.0 | 1.0 |
| GEMNEGCL_45 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_46 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_47 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_48 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_49 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_50 | 1.0 | 0.0 | 1.0 |
| GEMNEGCL_51 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_56 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_57 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_59 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_60 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_61 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_63 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_66 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_68 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_69 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_70 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_72 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_73 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_74 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_75 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_76 | 1.0 | 0.0 | 1.0 |
| GEMNEGCL_77 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_78 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_79 | 1.0 | 0.0 | 1.0 |
| GEMNEGCL_80 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_81 | 1.0 | 0.0 | 1.0 |
| GEMNEGCL_82 | 1.0 | 0.0 | 1.0 |
| GEMNEGCL_84 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_87 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_88 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_89 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_90 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_91 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_93 | 1.0 | 0.0 | 1.0 |
| GEMNEGCL_94 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_95 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_98 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_99 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_100 | 1.0 | 0.0 | 1.0 |
| GEMNEGCL_101 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_102 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_103 | 1.0 | 0.0 | 1.0 |
| GEMNEGCL_105 | 1.0 | 0.0 | 1.0 |
| GEMNEGCL_106 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_107 | 1.0 | 0.0 | 1.0 |
| GEMNEGCL_108 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_109 | 1.0 | 0.0 | 1.0 |
| GEMNEGCL_111 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_112 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_113 | 1.0 | 0.0 | 1.0 |
| GEMNEGCL_116 | 1.0 | 0.0 | 1.0 |
| GEMNEGCL_118 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_121 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_123 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_124 | 1.0 | 0.0 | 1.0 |
| GEMNEGCL_127 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_133 | 1.0 | 0.0 | 1.0 |
| GEMNEGCL_135 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_146 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_157 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_163 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_164 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_165 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_166 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_167 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_168 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_169 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_170 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_171 | 1.0 | 0.0 | 1.0 |
| GEMNEGCL_172 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_173 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_174 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_175 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_176 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_177 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_178 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_179 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_180 | 1.0 | 0.0 | 1.0 |
| GEMNEGCL_181 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_182 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_183 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_184 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_186 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_187 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_188 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_189 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_190 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_191 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_192 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_193 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_194 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_195 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_196 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_197 | 1.0 | 0.0 | 1.0 |
| GEMNEGCL_198 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_199 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_200 | 1.0 | 0.0 | 1.0 |
| GEMNEGCL_201 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_202 | 1.0 | 0.0 | 1.0 |
| GEMNEGCL_203 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_204 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_205 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_206 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_207 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_208 | 1.0 | 0.0 | 1.0 |
| GEMNEGCL_209 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_210 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_211 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_213 | 1.0 | 0.0 | 1.0 |
| GEMNEGCL_214 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_215 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_216 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_217 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_218 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_219 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_220 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_221 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_222 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_224 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_225 | 1.0 | 0.0 | 1.0 |
| GEMNEGCL_226 | 1.0 | 0.0 | 1.0 |
| GEMNEGCL_227 | 1.0 | 0.0 | 1.0 |
| GEMNEGCL_228 | 1.0 | 0.0 | 1.0 |
| GEMNEGCL_229 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_231 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_232 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_233 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_234 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_235 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_236 | 1.0 | 0.0 | 1.0 |
| GEMNEGCL_237 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_238 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_239 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_240 | 0.0 | 1.0 | 0.0 |
| GEMNEGCL_242 | 1.0 | 0.0 | 1.0 |
| GEMNEGCL_244 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GEMNEGCL_171 | 9579 | 39162 | False | Myoviridae | VOG6945, VOG0198, VOG8269, VOG0686, VOG4618, VOG1837, VOG7407, VOG1912, VOG5027, VOG1915, VOG1942, VOG4710, VOG1353, VOG1883, VOG1352, VOG4699, VOG1956, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691, VOG4620, VOG9945, VOG4705, VOG0861, VOG7017 |
| GEMNEGCL_172 | 11210 | 38159 | False | Myoviridae | VOG0736, VOG7454, VOG4845, VOG4691, VOG4550, VOG0573, VOG1348, VOG1433, VOG1956, VOG6163, VOG4699, VOG1352, VOG1883, VOG1881, VOG1353, VOG4778, VOG1942, VOG1915, VOG4918, VOG4564, VOG1912, VOG7407, VOG0796 |
| GEMNEGCL_195 | 45676 | 71233 | False | Siphoviridae | VOG0327, VOG3349, VOG0198, VOG4841, VOG4581, VOG10115, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG0209, VOG0660, VOG4545, VOG4633, VOG4659, VOG8355, VOG1594, VOG6474, VOG8868, VOG8608 |
Phigaro v2.4.0 (Database: Jan. 2024 release)