Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 10 | 10.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GECJGNHB_2 | 15905 | 17083 | tufA | 0.0 | elongation factor Tu | 85.24 | 99.49 | AHM69299 |
| GECJGNHB_16 | 28470 | 26965 | atpA | 0.0 | ATP synthase subunit alpha | 80.08 | 100.00 | ABD31377 |
| GECJGNHB_88 | 4512 | 5381 | pdxS | 1.07e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| GECJGNHB_14 | 33877 | 34653 | CodY | 7.27e-129 | nutrient-responsive regulator | 81.85 | 100.00 | ACJ80679 |
| GECJGNHB_14 | 33877 | 34653 | codY | 3.50e-125 | global regulator and isoleucine sensor | 80.69 | 100.00 | ASW39076 |
| GECJGNHB_42 | 124444 | 123875 | ClpP | 5.34e-104 | part of proteolytic complex | 83.68 | 97.44 | BAB94595 |
| GECJGNHB_34 | 7820 | 7134 | WalR | 5.71e-104 | transcriptional regulatory protein | 80.79 | 97.44 | EPH95667 |
| GECJGNHB_122 | 7524 | 7132 | spxA1 | 1.24e-73 | redox-responsive transcription factor | 88.55 | 100.00 | AAF21893 |
| GECJGNHB_122 | 7524 | 7132 | spx | 2.69e-68 | essential gene which is a thiol/oxidative stress sensor | 80.92 | 100.00 | BAB57159 |
| GECJGNHB_10 | 17592 | 17834 | SpoVG | 7.92e-40 | RNA-binding protein | 82.72 | 79.41 | AAT02994 |
| GECJGNHB_12 | 15586 | 15389 | CspA | 3.82e-30 | cold shock protein | 83.33 | 100.00 | CAA62903 |
| GECJGNHB_155 | 64783 | 64977 | CspD | 3.24e-29 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| GECJGNHB_155 | 64783 | 64980 | CspB | 2.18e-28 | cold shock protein | 80.30 | 100.00 | CAD00094 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GECJGNHB_1 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_2 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_4 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_5 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_7 | 1.0 | 0.0 | 1.0 |
| GECJGNHB_9 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_10 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_12 | 1.0 | 0.0 | 1.0 |
| GECJGNHB_13 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_14 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_15 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_16 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_17 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_18 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_19 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_20 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_21 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_22 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_23 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_24 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_25 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_26 | 1.0 | 0.0 | 1.0 |
| GECJGNHB_27 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_28 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_29 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_30 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_31 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_32 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_33 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_34 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_35 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_36 | 1.0 | 0.0 | 1.0 |
| GECJGNHB_37 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_38 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_39 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_40 | 1.0 | 0.0 | 1.0 |
| GECJGNHB_41 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_42 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_43 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_44 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_45 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_46 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_47 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_48 | 1.0 | 0.0 | 1.0 |
| GECJGNHB_49 | 1.0 | 0.0 | 1.0 |
| GECJGNHB_50 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_51 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_53 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_54 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_55 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_56 | 1.0 | 0.0 | 1.0 |
| GECJGNHB_57 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_58 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_59 | 1.0 | 0.0 | 1.0 |
| GECJGNHB_60 | 1.0 | 0.0 | 1.0 |
| GECJGNHB_62 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_63 | 1.0 | 0.0 | 1.0 |
| GECJGNHB_64 | 1.0 | 0.0 | 1.0 |
| GECJGNHB_65 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_66 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_67 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_69 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_70 | 1.0 | 0.0 | 1.0 |
| GECJGNHB_71 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_72 | 1.0 | 0.0 | 1.0 |
| GECJGNHB_73 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_74 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_75 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_76 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_77 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_79 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_80 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_81 | 1.0 | 0.0 | 1.0 |
| GECJGNHB_83 | 1.0 | 0.0 | 1.0 |
| GECJGNHB_84 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_85 | 1.0 | 0.0 | 1.0 |
| GECJGNHB_86 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_88 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_89 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_91 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_92 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_94 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_95 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_96 | 1.0 | 0.0 | 1.0 |
| GECJGNHB_97 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_98 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_99 | 1.0 | 0.0 | 1.0 |
| GECJGNHB_100 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_101 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_102 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_103 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_104 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_106 | 1.0 | 0.0 | 1.0 |
| GECJGNHB_107 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_108 | 1.0 | 0.0 | 1.0 |
| GECJGNHB_109 | 1.0 | 0.0 | 1.0 |
| GECJGNHB_110 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_111 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_112 | 1.0 | 0.0 | 1.0 |
| GECJGNHB_113 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_114 | 1.0 | 0.0 | 1.0 |
| GECJGNHB_115 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_116 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_117 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_118 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_119 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_120 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_122 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_123 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_124 | 1.0 | 0.0 | 1.0 |
| GECJGNHB_126 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_128 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_129 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_130 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_131 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_134 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_135 | 1.0 | 0.0 | 1.0 |
| GECJGNHB_136 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_138 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_139 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_140 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_141 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_142 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_143 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_144 | 1.0 | 0.0 | 1.0 |
| GECJGNHB_145 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_146 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_147 | 1.0 | 0.0 | 1.0 |
| GECJGNHB_148 | 1.0 | 0.0 | 1.0 |
| GECJGNHB_149 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_150 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_151 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_152 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_154 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_155 | 0.0 | 1.0 | 0.0 |
| GECJGNHB_156 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)