Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EFGPDFCN_12 | 49768 | 53331 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 92.48 | 100.08 | NC_008618.1 |
| EFGPDFCN_14 | 692 | 2611 | tet(W) | ARO:3000194 | tet(W) | 97.03 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EFGPDFCN_14 | 692 | 2611 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.06 | 100.00 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EFGPDFCN_14 | 692 | 2608 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.84 | 100.00 | WP_000691721.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EFGPDFCN_1 | 1.0 | 0.0 | 1.0 |
| EFGPDFCN_2 | 0.0 | 1.0 | 0.0 |
| EFGPDFCN_3 | 0.0 | 1.0 | 0.0 |
| EFGPDFCN_4 | 0.0 | 1.0 | 0.0 |
| EFGPDFCN_5 | 0.0 | 1.0 | 0.0 |
| EFGPDFCN_7 | 0.0 | 1.0 | 0.0 |
| EFGPDFCN_8 | 0.0 | 1.0 | 0.0 |
| EFGPDFCN_10 | 0.0 | 1.0 | 0.0 |
| EFGPDFCN_11 | 0.0 | 1.0 | 0.0 |
| EFGPDFCN_12 | 0.0 | 1.0 | 0.0 |
| EFGPDFCN_13 | 0.0 | 1.0 | 0.0 |
| EFGPDFCN_14 | 1.0 | 0.0 | 1.0 |
| EFGPDFCN_15 | 0.0 | 1.0 | 0.0 |
| EFGPDFCN_16 | 0.0 | 1.0 | 0.0 |
| EFGPDFCN_19 | 0.0 | 1.0 | 0.0 |
| EFGPDFCN_20 | 0.0 | 1.0 | 0.0 |
| EFGPDFCN_21 | 1.0 | 0.0 | 1.0 |
| EFGPDFCN_22 | 0.0 | 1.0 | 0.0 |
| EFGPDFCN_24 | 0.0 | 1.0 | 0.0 |
| EFGPDFCN_26 | 0.0 | 1.0 | 0.0 |
| EFGPDFCN_28 | 0.0 | 1.0 | 0.0 |
| EFGPDFCN_29 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EFGPDFCN_16 | 43118 | 53034 | False | Siphoviridae | VOG4544, VOG4556, VOG4568, VOG5587, VOG5589, VOG5588, VOG5793 |
| EFGPDFCN_20 | 13562 | 33566 | False | Siphoviridae | VOG5782, VOG2538, VOG4559, VOG5782, VOG4754, VOG2038, VOG1154, VOG4544, VOG0720, VOG4576, VOG4555, VOG4553, VOG1581, VOG4621, VOG4557, VOG5793, VOG3653 |
Phigaro v2.4.0 (Database: Jan. 2024 release)