Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FPPNHMCH_1 | 963 | 2882 | tet(W) | ARO:3000194 | tet(W) | 97.18 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| FPPNHMCH_1 | 963 | 2882 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.11 | 100.00 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FPPNHMCH_1 | 963 | 2879 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | EXACTX | 100.00 | 100.00 | WP_000691721.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FPPNHMCH_1 | 1.0 | 0.0 | 1.0 |
| FPPNHMCH_5 | 0.0 | 1.0 | 0.0 |
| FPPNHMCH_6 | 0.0 | 1.0 | 0.0 |
| FPPNHMCH_7 | 0.0 | 1.0 | 0.0 |
| FPPNHMCH_8 | 0.0 | 1.0 | 0.0 |
| FPPNHMCH_9 | 1.0 | 0.0 | 1.0 |
| FPPNHMCH_10 | 0.0 | 1.0 | 0.0 |
| FPPNHMCH_11 | 0.0 | 1.0 | 0.0 |
| FPPNHMCH_12 | 0.0 | 1.0 | 0.0 |
| FPPNHMCH_13 | 0.0 | 1.0 | 0.0 |
| FPPNHMCH_15 | 0.0 | 1.0 | 0.0 |
| FPPNHMCH_17 | 0.0 | 1.0 | 0.0 |
| FPPNHMCH_20 | 1.0 | 0.0 | 1.0 |
| FPPNHMCH_21 | 0.0 | 1.0 | 0.0 |
| FPPNHMCH_22 | 0.0 | 1.0 | 0.0 |
| FPPNHMCH_24 | 1.0 | 0.0 | 1.0 |
| FPPNHMCH_25 | 0.0 | 1.0 | 0.0 |
| FPPNHMCH_26 | 0.0 | 1.0 | 0.0 |
| FPPNHMCH_27 | 0.0 | 1.0 | 0.0 |
| FPPNHMCH_28 | 0.0 | 1.0 | 0.0 |
| FPPNHMCH_29 | 0.0 | 1.0 | 0.0 |
| FPPNHMCH_30 | 0.0 | 1.0 | 0.0 |
| FPPNHMCH_31 | 0.0 | 1.0 | 0.0 |
| FPPNHMCH_32 | 0.0 | 1.0 | 0.0 |
| FPPNHMCH_33 | 0.0 | 1.0 | 0.0 |
| FPPNHMCH_34 | 0.0 | 1.0 | 0.0 |
| FPPNHMCH_35 | 0.0 | 1.0 | 0.0 |
| FPPNHMCH_36 | 0.0 | 1.0 | 0.0 |
| FPPNHMCH_37 | 0.0 | 1.0 | 0.0 |
| FPPNHMCH_38 | 0.0 | 1.0 | 0.0 |
| FPPNHMCH_40 | 0.0 | 1.0 | 0.0 |
| FPPNHMCH_41 | 0.0 | 1.0 | 0.0 |
| FPPNHMCH_42 | 0.0 | 1.0 | 0.0 |
| FPPNHMCH_43 | 0.0 | 1.0 | 0.0 |
| FPPNHMCH_44 | 0.0 | 1.0 | 0.0 |
| FPPNHMCH_45 | 1.0 | 0.0 | 1.0 |
| FPPNHMCH_47 | 0.0 | 1.0 | 0.0 |
| FPPNHMCH_48 | 0.0 | 1.0 | 0.0 |
| FPPNHMCH_49 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FPPNHMCH_5 | 82816 | 105784 | False | Siphoviridae | VOG4683, VOG4659, VOG4633, VOG6163, VOG9471, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG4553, VOG4568, VOG4556, VOG3644, VOG4544, VOG4581, VOG4841 |
| FPPNHMCH_31 | 11756 | 32652 | False | Siphoviridae | VOG9091, VOG0861, VOG5357, VOG5283, VOG6163, VOG4633, VOG4598, VOG0800, VOG3636, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG10914, VOG4564, VOG0720 |
Phigaro v2.4.0 (Database: Jan. 2024 release)