Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 10 | 10.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OOCMJLAE_64 | 32901 | 34079 | tufA | 0.0 | elongation factor Tu | 85.75 | 99.49 | AHM69299 |
| OOCMJLAE_35 | 20148 | 18643 | atpA | 0.0 | ATP synthase subunit alpha | 80.08 | 100.00 | ABD31377 |
| OOCMJLAE_90 | 4499 | 5368 | pdxS | 1.11e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| OOCMJLAE_80 | 5151 | 4375 | CodY | 1.10e-128 | nutrient-responsive regulator | 81.85 | 100.00 | ACJ80679 |
| OOCMJLAE_80 | 5151 | 4375 | codY | 5.27e-125 | global regulator and isoleucine sensor | 80.69 | 100.00 | ASW39076 |
| OOCMJLAE_22 | 9353 | 8784 | ClpP | 4.22e-105 | part of proteolytic complex | 83.68 | 97.44 | BAB94595 |
| OOCMJLAE_109 | 26640 | 27326 | WalR | 5.56e-104 | transcriptional regulatory protein | 80.79 | 97.44 | EPH95667 |
| OOCMJLAE_82 | 7231 | 6839 | spxA1 | 7.89e-73 | redox-responsive transcription factor | 88.55 | 100.00 | AAF21893 |
| OOCMJLAE_82 | 7231 | 6839 | spx | 1.71e-67 | essential gene which is a thiol/oxidative stress sensor | 80.92 | 100.00 | BAB57159 |
| OOCMJLAE_114 | 17981 | 18223 | SpoVG | 7.98e-40 | RNA-binding protein | 82.72 | 79.41 | AAT02994 |
| OOCMJLAE_94 | 35881 | 36078 | CspA | 6.17e-30 | cold shock protein | 83.33 | 100.00 | CAA62903 |
| OOCMJLAE_51 | 46878 | 47072 | CspD | 2.98e-29 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| OOCMJLAE_51 | 46878 | 47075 | CspB | 2.00e-28 | cold shock protein | 80.30 | 100.00 | CAD00094 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OOCMJLAE_1 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_2 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_5 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_6 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_7 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_8 | 1.0 | 0.0 | 1.0 |
| OOCMJLAE_10 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_11 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_12 | 1.0 | 0.0 | 1.0 |
| OOCMJLAE_13 | 1.0 | 0.0 | 1.0 |
| OOCMJLAE_14 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_16 | 1.0 | 0.0 | 1.0 |
| OOCMJLAE_17 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_18 | 1.0 | 0.0 | 1.0 |
| OOCMJLAE_19 | 1.0 | 0.0 | 1.0 |
| OOCMJLAE_20 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_22 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_23 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_24 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_26 | 1.0 | 0.0 | 1.0 |
| OOCMJLAE_27 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_29 | 1.0 | 0.0 | 1.0 |
| OOCMJLAE_30 | 1.0 | 0.0 | 1.0 |
| OOCMJLAE_31 | 1.0 | 0.0 | 1.0 |
| OOCMJLAE_32 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_34 | 1.0 | 0.0 | 1.0 |
| OOCMJLAE_35 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_36 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_37 | 1.0 | 0.0 | 1.0 |
| OOCMJLAE_38 | 1.0 | 0.0 | 1.0 |
| OOCMJLAE_40 | 1.0 | 0.0 | 1.0 |
| OOCMJLAE_41 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_42 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_43 | 1.0 | 0.0 | 1.0 |
| OOCMJLAE_44 | 1.0 | 0.0 | 1.0 |
| OOCMJLAE_45 | 1.0 | 0.0 | 1.0 |
| OOCMJLAE_46 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_47 | 1.0 | 0.0 | 1.0 |
| OOCMJLAE_48 | 1.0 | 0.0 | 1.0 |
| OOCMJLAE_50 | 1.0 | 0.0 | 1.0 |
| OOCMJLAE_51 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_52 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_53 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_54 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_55 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_56 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_57 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_58 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_59 | 1.0 | 0.0 | 1.0 |
| OOCMJLAE_60 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_62 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_63 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_64 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_65 | 1.0 | 0.0 | 1.0 |
| OOCMJLAE_66 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_67 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_69 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_70 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_71 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_72 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_73 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_74 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_75 | 1.0 | 0.0 | 1.0 |
| OOCMJLAE_76 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_77 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_78 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_79 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_80 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_81 | 1.0 | 0.0 | 1.0 |
| OOCMJLAE_82 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_84 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_85 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_86 | 1.0 | 0.0 | 1.0 |
| OOCMJLAE_88 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_89 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_90 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_91 | 1.0 | 0.0 | 1.0 |
| OOCMJLAE_92 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_93 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_94 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_95 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_96 | 1.0 | 0.0 | 1.0 |
| OOCMJLAE_97 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_98 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_99 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_100 | 1.0 | 0.0 | 1.0 |
| OOCMJLAE_101 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_102 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_103 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_104 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_105 | 1.0 | 0.0 | 1.0 |
| OOCMJLAE_107 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_108 | 1.0 | 0.0 | 1.0 |
| OOCMJLAE_109 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_110 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_111 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_112 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_113 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_114 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_115 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_116 | 1.0 | 0.0 | 1.0 |
| OOCMJLAE_117 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_119 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_120 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_121 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_122 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_125 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_126 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_127 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_128 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_129 | 1.0 | 0.0 | 1.0 |
| OOCMJLAE_130 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_131 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_132 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_133 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_134 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_135 | 1.0 | 0.0 | 1.0 |
| OOCMJLAE_136 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_137 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_138 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_139 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_140 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_141 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_142 | 0.0 | 1.0 | 0.0 |
| OOCMJLAE_143 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OOCMJLAE_57 | 4672 | 36133 | False | Siphoviridae | VOG4602, VOG9667, VOG9667, VOG4552, VOG8241, VOG3549, VOG1878, VOG4600, VOG1309, VOG4855, VOG9600, VOG0025, VOG9996, VOG0397, VOG0536, VOG0195, VOG6440, VOG1298, VOG3553, VOG8445, VOG0198, VOG0611, VOG7407, VOG7708, VOG4568, VOG3210, VOG4711, VOG1581, VOG3888, VOG5660, VOG4557, VOG6163, VOG0801, VOG4619, VOG6373, VOG4660 |
| OOCMJLAE_78 | 20081 | 61146 | False | Siphoviridae | VOG6778, VOG0275, VOG4602, VOG4548, VOG0982, VOG9858, VOG9667, VOG11075, VOG6495, VOG0181, VOG1878, VOG4690, VOG8647, VOG0226, VOG4552, VOG0198, VOG0275, VOG4841, VOG4581, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0704, VOG4586, VOG5852, VOG6163, VOG0801, VOG3462, VOG8438, VOG6243, VOG8580, VOG0753, VOG0136, VOG4918 |
Phigaro v2.4.0 (Database: Jan. 2024 release)